FC872457

Overview
NameFC872457
Unique NameFC872457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length951
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: MCFP_DICDI (Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.151e-12
Identity = 42/144 (29.17%), Postives = 67/144 (46.53%), Query Frame = 3
Query:  468 RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPV 896
            + V++EGI  LWRGN+A ++R FP  A+ F   +  K   +   D+   ++ F AG+               Y LD  R RLA   +  KK  +        + K T   DG+ G+YRG   + +G + Y G+ F  ++ L  +
Sbjct:   60 KIVENEGIKGLWRGNSATILRVFPYAAVQFLSYETIKN--HLVADKSSSFQIFLAGSAAGGIAVCA-----TYPLDLLRARLA--IEIHKKPTKPH-----HLLKSTFTKDGVKGIYRGIQPTLIGILPYGGISFSTFEFLKRI 189          

HSP 2 Score: 35.4242 bits (80), Expect = 2.151e-12
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 2
Query:  314 VDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            V FL GG++   +K+A AP+ERVK+L Q
Sbjct:   16 VSFLSGGLAGVTAKSAVAPLERVKILYQ 43          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.786e-12
Identity = 47/162 (29.01%), Postives = 71/162 (43.83%), Query Frame = 3
Query:  432 SHPYK--GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKT-LKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVT 905
            +H YK  G+        + EG L L++GN A +IR FP  A+ F   +++K     K    G+  +  AG+               Y LD  R RLA   K     GE  ++G+I  +K    K  G  G YRG   + +G   Y  + F  + +L  VG++
Sbjct:   68 NHHYKHLGVLSPLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGKMSMTAVIC--TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYASVSFFTFGTLKSVGLS 222          

HSP 2 Score: 32.3426 bits (72), Expect = 2.786e-12
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 2
Query:  308 FLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            +L  FL G ++   +KT  AP++RVK+L+Q
Sbjct:   36 WLRSFLAGSIAGCCAKTTVAPLDRVKVLLQ 65          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.575e-12
Identity = 39/143 (27.27%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            F + +++ G  SLWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  K+ L  +G+A  Y+G+  + +G I Y G+   +Y++L
Sbjct:  230 FTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETL 360          

HSP 2 Score: 30.0314 bits (66), Expect = 3.575e-12
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  329 GGVSAAVSKTAAAPIERVKLLIQ 397
            GG + AVS+T  AP++R+K+L+Q
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQ 215          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.575e-12
Identity = 40/148 (27.03%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  447 GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            GI   F + +++ G  SLWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+     A +K G  Q++G++D  ++ L  +G+A  Y+G+  + +G I Y G+   +Y++L
Sbjct:  225 GIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRM-----ALRKTG--QYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETL 360          

HSP 2 Score: 30.0314 bits (66), Expect = 3.575e-12
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  329 GGVSAAVSKTAAAPIERVKLLIQ 397
            GG + AVS+T  AP++R+K+L+Q
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQ 215          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.028e-12
Identity = 39/143 (27.27%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            F + +++ G  SLWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  +K L  +G+A  Y+G+  + +G I Y G+   +Y++L
Sbjct:  230 FTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETL 360          

HSP 2 Score: 30.0314 bits (66), Expect = 6.028e-12
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  329 GGVSAAVSKTAAAPIERVKLLIQ 397
            GG + AVS+T  AP++R+K+L+Q
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQ 215          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 6.041e-12
Identity = 43/171 (25.15%), Postives = 66/171 (38.60%), Query Frame = 3
Query:  444 KGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG---YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDSFLASFLLG 947
            +GI          EG +  ++GN  NVIR  P  A+ F   + +K       D+     Y   F G                Y LD  R+RL       K      +NG+ D  K  ++ +G+AGLY+G   S +G   Y  + F  Y++L    +      + + S   G
Sbjct:  183 RGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTYENLFVGGAAGVTSLLC-----TYPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFG 342          

HSP 2 Score: 33.4982 bits (75), Expect = 6.041e-12
Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 2
Query:  260 FLLYSYK--LHQKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            +L YS K  +H    + S+ +  L GGV+ AVS+T  +P+ER+K+L Q
Sbjct:  121 WLQYSTKPIVHAPADVPSWKL-LLSGGVAGAVSRTCTSPLERLKILNQ 167          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.826e-12
Identity = 38/143 (26.57%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  462 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            F + +++ G  SLWRGN  NV++  P  A+ F   +  KRL    ++    + +  AG+              +Y ++  +TR+A      +K G  Q++G++D  ++ L  +G+A  Y+G+  + +G I Y G+   +Y++L
Sbjct:  230 FTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSS-----IYPMEVLKTRMA-----LRKTG--QYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETL 360          

HSP 2 Score: 30.0314 bits (66), Expect = 7.826e-12
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  329 GGVSAAVSKTAAAPIERVKLLIQ 397
            GG + AVS+T  AP++R+K+L+Q
Sbjct:  193 GGGAGAVSRTCTAPLDRLKVLMQ 215          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.712e-11
Identity = 37/138 (26.81%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  474 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            +++ G+LSLWRGN  NV++  P  A+ F   +  KR    +++     + F                 +Y ++  +TRL       ++ G  Q+ GL+D  K+ L+ +G    YRG+  + +G I Y G+   +Y++L
Sbjct:  232 IQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQERFVAG----SLAGATAQTIIYPMEVLKTRL-----TLRRTG--QYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETL 358          

HSP 2 Score: 29.261 bits (64), Expect = 1.712e-11
Identity = 12/37 (32.43%), Postives = 23/37 (62.16%), Query Frame = 2
Query:  287 QKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            ++K    +    + G V+ AVS+T  AP++R+K+ +Q
Sbjct:  177 EEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKVFMQ 213          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.208e-11
Identity = 43/150 (28.67%), Postives = 67/150 (44.67%), Query Frame = 3
Query:  447 GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRD---GYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL 887
            G+  C      + GI S WRGN  NVI+  P  A+ F   D  KRL   KK  +    + +  AG+              +Y ++  +TRL     A +K G+    G+I    K    +GI   Y+G+  + +G I Y G+   +Y++L
Sbjct:  287 GVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEISTFERLCAGSAAGAISQST-----IYPMEVMKTRL-----ALRKTGQLD-RGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETL 425          

HSP 2 Score: 29.6462 bits (65), Expect = 2.208e-11
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  329 GGVSAAVSKTAAAPIERVKLLIQ 397
            GG + AVS+T  AP +R+K+ +Q
Sbjct:  255 GGAAGAVSRTCTAPFDRIKVYLQ 277          
BLAST of FC872457 vs. ExPASy Swiss-Prot
Match: YP011_YEAST (Uncharacterized mitochondrial carrier YPR011C OS=Saccharomyces cerevisiae GN=YPR011C PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.249e-11
Identity = 41/161 (25.47%), Postives = 67/161 (41.61%), Query Frame = 3
Query:  444 KGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA------NDAKAAKKGGERQFNGLIDVYKKTLKSD-GIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGV 902
            +GI     +   +EG   L+RGN  N IR FP  A+ F  ++   K+LF+   +                          Y LD  +TRL+      +    +K     +  G+  +  +T + + G+ GLYRG   + +G + Y  L F +Y+ L   GV
Sbjct:   61 RGIFSSIRQVYHEEGTKGLFRGNGLNCIRIFPYSAVQFVVYEACKKKLFHVNGNNGQEQLTNTQRLFSGALCGGCSVVATYPLDLIKTRLSIQTANLSSLNRSKAKSISKPPGIWQLLSETYRLEGGLRGLYRGVWPTSLGVVPYVALNFAVYEQLREFGV 221          

HSP 2 Score: 40.817 bits (94), Expect = 2.249e-11
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 2
Query:  281 LHQKKSLSSFL-----VDFLMGGVSAAVSKTAAAPIERVKLLIQ 397
            L Q  S+  FL     + FL GGV+ AVS+T  +P ERVK+L+Q
Sbjct:    8 LEQPNSIKDFLKQDSNIAFLAGGVAGAVSRTVVSPFERVKILLQ 51          
The following BLAST results are available for this feature:
BLAST of FC872457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MCFP_DICDI2.151e-1229.17Mitochondrial substrate carrier family protein P O... [more]
GDC_RAT2.786e-1229.01Graves disease carrier protein (Fragment) OS=Rattu... [more]
SCMC2_RAT3.575e-1227.27Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN3.575e-1227.03Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_BOVIN6.028e-1227.27Calcium-binding mitochondrial carrier protein SCaM... [more]
MCFB_DICDI6.041e-1225.15Mitochondrial substrate carrier family protein B O... [more]
SCMC2_MOUSE7.826e-1226.57Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC3_MOUSE1.712e-1126.81Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC2_CAEEL2.208e-1128.67Putative calcium-binding mitochondrial carrier F55... [more]
YP011_YEAST2.249e-1125.47Uncharacterized mitochondrial carrier YPR011C OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AC12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872457 ID=FC872457; Name=FC872457; organism=Citrus clementina; type=EST; length=951bp
GGGGACATTACGGTGGTCCTCCACACTAGGCGACCTCCTCAGGTCACCAT
CTTCAGCTTGCAAACACGGCAGTTGGACCGTATCCATCCGTATTTTCAGA
AAAATGCAAGACCAGTCATACTTCATCTTCTGGGGGTCCTCCCCCAATCT
GTATGCCCACAACTACAGTGTGGGCAGAGTTCCTTCGTTAATAGAGGTTT
CACAGAATTCTTTTTGGGCAGCAAGTCAGAGGAACTGGCCTGGCACTTGT
GTCTCCTGGTTTCTCCTATATTCGTACAAGCTCCATCAGAAAAAAAGTCT
TTCTTCTTTTTTGGTGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTT
CCAAGACTGCAGCTGCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAAA
TCAAGATGAGATGATCAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGA
TTTCTGATTGCTTTGGTAGAACTGTTAAGGATGAAGGCATACTATCTCTT
TGGAGAGGCAACACTGCCAATGTTATCAGATACTTCCCTACCCAGGCCCT
GAACTTTGCATTCAAGGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAG
ACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGG
GCTGCTGGTGCTTCATCGCTTCTTTTTGTGTATTCGCTTGACTATGCAAG
AACACGTTTGGCAAATGATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGC
AGTTTAATGGTTTGATTGATGTCTACAAGAAGACTCTGAAATCTGATGGC
ATTGCTGGGCTCTACCGTGGATTCAGCATCTCATGTGTTGGAAATATAGT
GTATCGTGGGCTCTACTTTGGAATGTACGATTCTCTAAACCCTGTGGGTG
TGACTGATGGGATGCAGGATAGTTTCTTGGCTAGCTTCTTACTTGGCTGG
G
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