FC872458

Overview
NameFC872458
Unique NameFC872458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP19_ARATH (Serine carboxypeptidase-like 19 OS=Arabidopsis thaliana GN=SCPL19 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 2 
Query:    5 WIKSLNLTIETGWQPWLVES-QVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WI++LN +I   W+PW++ S QVAGY   Y  K    +TFAT+KG GHT  EY P +C  M  RW    PL
Sbjct:  400 WIRALNYSIVDDWRPWMMSSNQVAGYTRTYANK----MTFATIKGGGHTA-EYTPDQCSLMFRRWIDGEPL 465
[Close]
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP40_ARATH (Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:    8 IKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            +K +NLT +T W PW +  +V GY   YKGK    LTFATV+GAGH  P ++PK  L++   +    PL
Sbjct:  432 LKKMNLTAKTAWHPWYLGGEVGGYTEEYKGK----LTFATVRGAGHQVPSFQPKRSLSLFIHFLNDTPL 496
The following BLAST results are available for this feature:
BLAST of FC872458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SCP19_ARATH2.061e-1147.89Serine carboxypeptidase-like 19 OS=Arabidopsis tha... [more]
SCP40_ARATH2.692e-1144.93Serine carboxypeptidase-like 40 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BG01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872458 ID=FC872458; Name=FC872458; organism=Citrus clementina; type=EST; length=427bp
GGGATGGATAAAGTCATTAAACTTGACGATTGAAACTGGCTGGCAGCCGT
GGTTGGTGGAAAGTCAAGTTGCAGGATATTGGTACCGTTACAAGGGAAAG
AACAATTATCATTTGACATTTGCCACAGTAAAGGGAGCAGGTCATACAGG
TCCAGAGTACAAGCCTAAGGAATGTCTTGCAATGATCGACAGGTGGTTCG
CATCCTATCCTCTCTAGAGCCACGTTCATATAATTATTAAGTTTTCGAGA
TTGAAAAATAAATGTGGAAGTTAAGTGGCTGATGGCGTTGTAAACACCGA
TGAAATTATTTATGTTTGGCTTTACCAAACTTATGATCTGAAAAACTAGT
ATTGCAAGAGCCTTGATGCTCCTATTTGCTTTTTTAAAAATGTCGCTCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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