FC872489

Overview
NameFC872489
Unique NameFC872489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  142 GNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGS 441
            G +  Y+GVR R WGKWV+E+R+P  + RIWLG++ +            + ++G+SA LNFPD     P    ++P  IQ  A + A    +QS     S
Sbjct:   31 GKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSS 130          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  130 GGREGNNGR-----YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNE 447
            GG+E ++       Y GVR R+WGKWV+E+R+P  + RIWLGS+               CL+G  A LNFP+   ++P     TP  IQ  A   A+ A A  +  +G ++
Sbjct:   31 GGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAA---AKAANAVKIIKMGDDD 138          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  154 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPD---NPPEIPLADEMT---PVQIQEFAFRHA 402
            +YKGVRMR WG WV E+R PN + RIWLGSY T           ++CL+G  A LNFP+     P +   DE T   P  IQ+ A + A
Sbjct:   42 KYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQAA 130          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  154 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADE-------MTPVQIQEFAFRHA 402
            +YKGVRMR WG WV+E+R PN + RIWLGSY T           ++CL+G  A LNFP +     L D        ++P  IQ  A + A
Sbjct:   49 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAA 138          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  130 GGREGNNG-----RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNE 447
            G R   NG      Y+GVRMR WGKWV+E+R+P  + RIWLG+Y T            + ++G++A LNFP    E+P     +P  IQ  A   A      SV D+ ++E
Sbjct:   86 GKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNW-QDSVNDVSNSE 195          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  154 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSA-TLNFPD 330
            +YKGVRMR WG WV+E+R PN + RIWLGSY T           ++CL+GSSA  LNFP+
Sbjct:   34 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPE 93          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            ++GVRMR+WGKWV+E+R+P  + RIWLG++ T            + ++G SA LNFP+    +P      P  IQE A
Sbjct:   40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAA 117          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            Y+GVRMR WGKWV+E+RQP  + RIWLG++ T            + ++GSSA LNFP+     P     +P  IQ  A
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAA 156          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  145 NNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHA 402
            N   Y+GVRMR WGKWV+E+R+P  + RIWLG+Y T            + ++G+S  LNFP+    +P     +P  IQ  A + A
Sbjct:   67 NPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAA 152          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            Y+GVRMR WGKWV+E+R+P  + RIWLG++ T            + ++G+SA LNFP+    +P     +P  +Q  A
Sbjct:   43 YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAA 120          
The following BLAST results are available for this feature:
BLAST of FC872489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
TINY_ARATH1.150e-1336.00Ethylene-responsive transcription factor TINY OS=A... [more]
ERF23_ARATH1.150e-1336.04Ethylene-responsive transcription factor ERF023 OS... [more]
ERF13_ARATH1.962e-1344.94Ethylene-responsive transcription factor ERF013 OS... [more]
ERF12_ARATH1.962e-1342.22Ethylene-responsive transcription factor ERF012 OS... [more]
ERF34_ARATH5.707e-1337.84Ethylene-responsive transcription factor ERF034 OS... [more]
ERF14_ARATH9.735e-1355.00Ethylene-responsive transcription factor ERF014 OS... [more]
ERF39_ARATH1.271e-1241.03Ethylene-responsive transcription factor ERF039 OS... [more]
ERF36_ARATH1.661e-1243.59Ethylene-responsive transcription factor ERF036 OS... [more]
ERF35_ARATH1.661e-1239.53Ethylene-responsive transcription factor ERF035 OS... [more]
ERF37_ARATH2.169e-1239.74Ethylene-responsive transcription factor ERF037 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AE03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872489 ID=FC872489; Name=FC872489; organism=Citrus clementina; type=EST; length=732bp
GGGGATTCTGCTTCCGTCTCTTAATTCTCCATCTCCACGTCCGCTGACAA
AATCGGTTTATTTTAAAGCCGAAAGCCGGTGCTTGCTTTGCATTAAAGGA
AATAATTTCCAATTATGGTGAGGCCGAGCGGCGGAAGAGAAGGCAATAAC
GGGAGATACAAGGGAGTGAGGATGCGGAAGTGGGGCAAATGGGTGGCGGA
AGTTCGGCAACCTAACAGCAGAGGCAGAATTTGGTTGGGTTCTTACAAGA
CGGCGGACGAAGCTGCTAGAGCGTACGATGCGGCTGTCGTTTGCTTACGT
GGATCCTCCGCGACGCTCAATTTCCCCGATAACCCCCCGGAGATTCCGTT
GGCGGATGAAATGACGCCAGTCCAGATTCAGGAATTTGCGTTTCGGCATG
CCCGAAGGGCTCCGGCCCAATCGGTGGAGGATTTAGGATCTAATGAGGCG
GCTGTCGTTTCCGCTTCAGGTTCTAGTAGCGGTTACGGAGTTGATGATGT
GGGCGTCGATGGGGCATTCTATCAGTCACCTGGTCTGTGGACCTTTTGAG
GTTGTTTATTTGTTTATTTATTTTTTAAATTAACAAAAAAAACTTGATAG
ATTACGGAGTAAAGGGTTGTTTTTGTAAAGTTTAAAGTGTTCTACTTGCA
AATTCGACGAATGTTTGTATTTTAACTAAACTTTTGAGATGCCACCTGCT
TTTGTCTGTAGGAATAAATTTTTGGGTAATGT
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