FC872489

Overview
NameFC872489
Unique NameFC872489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9963 contig Ccv1_Contig9963:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDN 333
            Y+GVR R+WGKWVAE+R+P SR R+WLG++ T              LRG SATLNFP++
Sbjct:  143 YRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEH 201          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHA 402
            Y+GVRMR WGKWV+E+R+P  + RIWLG++ T            + ++G+SA LNFP+    +P    ++P  ++  A + A
Sbjct:   19 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAA 100          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  151 GRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            G Y+G RMR WGKWV+E+R+P  + RIWLG++ T            + ++GSSA LNFP+    +P    ++   IQ  A
Sbjct:   24 GVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAA 103          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            ++GVRMR+WGKWV+E+R+P  + RIWLG++ T            + ++G SA LNFP+    +P      P  IQ  A
Sbjct:   45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAA 122          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 1
Query:  145 NNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            N   Y+G+R RKWGKWV+E+R+P  + RIWLGSY+T            + LRG    LNFP+     P  +  +   IQ  A
Sbjct:   16 NQLSYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPESSSSEHIQAAA 97          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  136 REGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            RE  +  Y+GVR R  GKWV EVR+PN + RIWLG++ T            + LRG SA LNF D+   + + +   P +IQ+ A
Sbjct:   47 RETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAA 131          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 1
Query:  130 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDN 333
            GG E +N  Y+GVR R WGKWVAE+R+PN   R+WLGS+ T              + G +A +NF DN
Sbjct:   67 GGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFADN 134          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 1
Query:  130 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDN 333
            GG E +N  Y+GVR R WGKWVAE+R+PN   R+WLGS+ T              + G +A +NF DN
Sbjct:   67 GGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFADN 134          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  139 EGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIP 348
            +G    Y+GVR RKWGKWV+E+R+P ++ RIWLGS++T               RG  A LNFP+    +P
Sbjct:   18 KGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLP 87          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  130 GGREGNNGR---YKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            G  + N GR   Y+GVR RK   KWV+E+R+P    RIWLG++ T            + L+GS A LNFP++   +P    M+P  IQ  A
Sbjct:    3 GTSKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAA 93          
The following BLAST results are available for this feature:
BLAST of FC872489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF54_ARATH3.699e-1252.54Ethylene-responsive transcription factor ERF054 OS... [more]
ERF43_ARATH3.699e-1237.80Ethylene-responsive transcription factor ERF043 OS... [more]
ERF42_ARATH6.310e-1240.00Ethylene-responsive transcription factor ERF042 OS... [more]
ERF38_ARATH6.310e-1239.74Ethylene-responsive transcription factor ERF038 OS... [more]
ERF22_ARATH6.310e-1240.24Ethylene-responsive transcription factor ERF022 OS... [more]
DRE1D_ARATH8.241e-1241.18Dehydration-responsive element-binding protein 1D ... [more]
DRE2A_ORYSJ2.398e-1145.59Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI2.398e-1145.59Dehydration-responsive element-binding protein 2A ... [more]
ERF21_ARATH3.132e-1142.86Ethylene-responsive transcription factor ERF021 OS... [more]
ERF24_ARATH5.342e-1139.56Ethylene-responsive transcription factor ERF024 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AE03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872489 ID=FC872489; Name=FC872489; organism=Citrus clementina; type=EST; length=732bp
GGGGATTCTGCTTCCGTCTCTTAATTCTCCATCTCCACGTCCGCTGACAA
AATCGGTTTATTTTAAAGCCGAAAGCCGGTGCTTGCTTTGCATTAAAGGA
AATAATTTCCAATTATGGTGAGGCCGAGCGGCGGAAGAGAAGGCAATAAC
GGGAGATACAAGGGAGTGAGGATGCGGAAGTGGGGCAAATGGGTGGCGGA
AGTTCGGCAACCTAACAGCAGAGGCAGAATTTGGTTGGGTTCTTACAAGA
CGGCGGACGAAGCTGCTAGAGCGTACGATGCGGCTGTCGTTTGCTTACGT
GGATCCTCCGCGACGCTCAATTTCCCCGATAACCCCCCGGAGATTCCGTT
GGCGGATGAAATGACGCCAGTCCAGATTCAGGAATTTGCGTTTCGGCATG
CCCGAAGGGCTCCGGCCCAATCGGTGGAGGATTTAGGATCTAATGAGGCG
GCTGTCGTTTCCGCTTCAGGTTCTAGTAGCGGTTACGGAGTTGATGATGT
GGGCGTCGATGGGGCATTCTATCAGTCACCTGGTCTGTGGACCTTTTGAG
GTTGTTTATTTGTTTATTTATTTTTTAAATTAACAAAAAAAACTTGATAG
ATTACGGAGTAAAGGGTTGTTTTTGTAAAGTTTAAAGTGTTCTACTTGCA
AATTCGACGAATGTTTGTATTTTAACTAAACTTTTGAGATGCCACCTGCT
TTTGTCTGTAGGAATAAATTTTTGGGTAATGT
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