FC872489

Overview
NameFC872489
Unique NameFC872489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 32/93 (34.41%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  106 FPIMVRPSGGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQE 384
            +P +   S G++  + RYKG+R R WG+W AE+R P    R+WLG++ T              +RG+ A LNFP+       A   T  Q++E
Sbjct:    8 YPWLGSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEE 100          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  136 REGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            RE  +  Y+GVR R  GKWV E+R+PN + RIWLG+++T            + LRG SA LNF D+   + + +     +IQ+ A
Sbjct:   44 RETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAA 128          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  136 REGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            RE  +  Y+GVR R  GKWV+EVR+PN + RIWLG+++T            + LRG SA LNF D+   + + +      IQ+ A
Sbjct:   41 RETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAA 125          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFP-DNPPEIPLAD--EMTPVQIQEFAFRHA 402
            Y+GVR R WGKWV+E+R P +  RIWLGSY             + C+RG     NFP D  P++P      ++ + IQ  A  +A
Sbjct:   27 YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSKLDIQTIATNYA 111          
The following BLAST results are available for this feature:
BLAST of FC872489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF73_ARATH6.977e-1134.41Ethylene-responsive transcription factor ERF073 OS... [more]
DRE1C_ARATH6.977e-1138.82Dehydration-responsive element-binding protein 1C ... [more]
DRE1B_ARATH6.977e-1140.00Dehydration-responsive element-binding protein 1B ... [more]
ERF15_ARATH9.112e-1138.82Ethylene-responsive transcription factor ERF015 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AE03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872489 ID=FC872489; Name=FC872489; organism=Citrus clementina; type=EST; length=732bp
GGGGATTCTGCTTCCGTCTCTTAATTCTCCATCTCCACGTCCGCTGACAA
AATCGGTTTATTTTAAAGCCGAAAGCCGGTGCTTGCTTTGCATTAAAGGA
AATAATTTCCAATTATGGTGAGGCCGAGCGGCGGAAGAGAAGGCAATAAC
GGGAGATACAAGGGAGTGAGGATGCGGAAGTGGGGCAAATGGGTGGCGGA
AGTTCGGCAACCTAACAGCAGAGGCAGAATTTGGTTGGGTTCTTACAAGA
CGGCGGACGAAGCTGCTAGAGCGTACGATGCGGCTGTCGTTTGCTTACGT
GGATCCTCCGCGACGCTCAATTTCCCCGATAACCCCCCGGAGATTCCGTT
GGCGGATGAAATGACGCCAGTCCAGATTCAGGAATTTGCGTTTCGGCATG
CCCGAAGGGCTCCGGCCCAATCGGTGGAGGATTTAGGATCTAATGAGGCG
GCTGTCGTTTCCGCTTCAGGTTCTAGTAGCGGTTACGGAGTTGATGATGT
GGGCGTCGATGGGGCATTCTATCAGTCACCTGGTCTGTGGACCTTTTGAG
GTTGTTTATTTGTTTATTTATTTTTTAAATTAACAAAAAAAACTTGATAG
ATTACGGAGTAAAGGGTTGTTTTTGTAAAGTTTAAAGTGTTCTACTTGCA
AATTCGACGAATGTTTGTATTTTAACTAAACTTTTGAGATGCCACCTGCT
TTTGTCTGTAGGAATAAATTTTTGGGTAATGT
back to top