FC872500
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_DROME (Probable cleavage and polyadenylation specificity factor subunit 2 OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.366e-24 Identity = 74/258 (28.68%), Postives = 128/258 (49.61%), Query Frame = 3 Query: 93 LFDEQDINRSMDRIEVLDFHQTVEVN----GIKFWCYTAGHVLGAAMF-MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRN-IRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSIDDLSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTII 833 LF D++ + ++I L ++QTV + GI AGH++G ++ +V + ++Y D++ +++RHL EL + +I Y Q Q R R+ + I T+ G VLI GR EL +LD+ W N + + ++ + ++ I M++++ F A +NPF+FKHI +S+ D+ + GP VV+AS L+SG +R LF W S+ N+ ++ GTLA ++ Sbjct: 113 LFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELV 370
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_ORYSJ (Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.883e-24 Identity = 80/287 (27.87%), Postives = 146/287 (50.87%), Query Frame = 3 Query: 18 HATKAIYKL-LLTDY-VLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVN----GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF-SPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVG--PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 +AT+ +++L +LT Y +S+ V D LF DI+ + + L + Q +N GI + AGH LG ++ + G V+Y D++ ++RHL L F P + I ++ + H + +++ F D + ++ GG VL+P GR E+LLIL++YW+ + PIY+ + ++ + ++++ MN+ I F ++ N F K ++ + + D+L +G P VV+AS L+ G S +F ++ KN + GTLA+ + +P Sbjct: 85 YATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDIDAAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVLEILLILEQYWAQRHLIY--PIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGTLARMLQVDP 369
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_CAEEL (Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis elegans GN=cpsf-2 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.883e-24 Identity = 77/286 (26.92%), Postives = 145/286 (50.70%), Query Frame = 3 Query: 18 HATKAIYKL--LLTDYVLVSKVSVEDML-FDEQDINRSMDRIEVLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMV-DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNI-RERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS---NPFKFKHISPLNSIDDLSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIIS 836 +AT +YK+ + ++ S + VE+ + D++ + +++E + ++QTV + +G+ F AGH+LG +++ + + G ++Y D++ +++RHL F+ +I + + L Q R R+ + I T+ Q G +I GR EL +LD+ WSN + S +A + ++ + MNE++ ++S NPF KH++ +S +L V P VV+ S ++SG SR+LF WCSD +N ++ TLA +++ Sbjct: 85 YATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVDTAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVN 370
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_MOUSE (Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24 Identity = 83/291 (28.52%), Postives = 144/291 (49.48%), Query Frame = 3 Query: 18 HATKAIYKL--LLTDYVLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--ERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN--SNPFKFKHISPLNSIDDLSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 +AT +YK+ + + S+ + ED LF D++ + D+I+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + + HL L S +I ++ QPR + E+ T+V+ T+ G VLI GR EL +LD+ W + +Y + L V + + + M++++ F + +NPF+F+H+S + + DL+ V P VV+AS L+ G SR LF WC D KN+ ++ GTLA+ +I P Sbjct: 85 YATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 372
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_HUMAN (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24 Identity = 83/291 (28.52%), Postives = 144/291 (49.48%), Query Frame = 3 Query: 18 HATKAIYKL--LLTDYVLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--ERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN--SNPFKFKHISPLNSIDDLSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 +AT +YK+ + + S+ + ED LF D++ + D+I+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + + HL L S +I ++ QPR + E+ T+V+ T+ G VLI GR EL +LD+ W + +Y + L V + + + M++++ F + +NPF+F+H+S + + DL+ V P VV+AS L+ G SR LF WC D KN+ ++ GTLA+ +I P Sbjct: 85 YATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 372
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_BOVIN (Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24 Identity = 83/291 (28.52%), Postives = 144/291 (49.48%), Query Frame = 3 Query: 18 HATKAIYKL--LLTDYVLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--ERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN--SNPFKFKHISPLNSIDDLSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 +AT +YK+ + + S+ + ED LF D++ + D+I+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + + HL L S +I ++ QPR + E+ T+V+ T+ G VLI GR EL +LD+ W + +Y + L V + + + M++++ F + +NPF+F+H+S + + DL+ V P VV+AS L+ G SR LF WC D KN+ ++ GTLA+ +I P Sbjct: 85 YATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 372
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_XENLA (Cleavage and polyadenylation specificity factor subunit 2 OS=Xenopus laevis GN=cpsf2 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23 Identity = 80/291 (27.49%), Postives = 145/291 (49.83%), Query Frame = 3 Query: 18 HATKAIYKL--LLTDYVLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--ERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN--SNPFKFKHISPLNSIDDLSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 +AT +YK+ + + S+ + ED LF D++ + D+I+ L ++Q V + +G+ AGH++G ++ + G ++Y D++ + + HL L + +I ++ QPR + E+ T+V+ T+ G VLI GR EL +LD+ W + +Y + L V + + + M++++ F + +NPF+F+H++ + DL+ V P VV+AS L+ G SR+LF WC D KN+ ++ GTLA+ +I P Sbjct: 85 YATIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVDCAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLTLCHGYSDLARVPSPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRTTPGTLARFLIDHP 372
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_CAEBR (Probable cleavage and polyadenylation specificity factor subunit 2 OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22 Identity = 72/285 (25.26%), Postives = 144/285 (50.53%), Query Frame = 3 Query: 18 HATKAIYKL--LLTDYVLVSKVSVEDML-FDEQDINRSMDRIEVLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMV-DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ-PRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS---NPFKFKHISPLNSIDDLSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTII 833 + T +YK+ + ++ S + VE+ + D++ + +++E + ++QTV + +G+ F AGH++G +M+ + I G ++Y D++ +DRHL F+ +I + + L Q R R+ + I T+ Q G +I GR EL +LD+ W+N + S +A + ++ + M+E++ ++S NPF K+++ ++S +L + P VV+ S +++G SR+LF WC+D++N ++ TLA ++ Sbjct: 85 YCTVPVYKMGQMFIYDLVYSHLDVEEFQHYSLDDVDMAFEKVEQVKYNQTVVLKGDSGVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRKDRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSARYNPFTLKNVNLVHSHLELIKIRSPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTARPASFTLAARLV 369
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: Y047_METJA (Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii GN=MJ0047 PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.435e-21 Identity = 76/280 (27.14%), Postives = 136/280 (48.57%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDI--CIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN-PFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTII 833 V T +K + K+LL D V +++ + + ++ D+ ++ L+++ + ++AGH+ G+A +++ + +LYTGD + R + A+L DI IIESTYG +H R E F + I + +GG LIP +A+ RAQE+LLIL++Y + P Y +A + + Y +NE + + A N K + +I++LS G +V+ + G L G ++ + KNA ++ GY V + + +I Sbjct: 78 VITTELSKKLIKVLLKDMVKIAETENKKIPYNNHDVKEAIRHTIPLNYNDKKYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGDVKLRDTRLTKGADLSYTKDDIDILIIESTYGNSIHPDRKAVELSFIEKIKEILFRGGVALIPVFAVDRAQEILLILNDYNIDAP-------IYLDGMAVEVTKLMLNYKHMLNESSQLEKALKNVKIIEKSEDRIKAIENLSKNG-GIVVTTAGMLDGGPILYYLKLFMHNPKNALLLTGYQVRDSNGRHLI 349
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF2_DICDI (Cleavage and polyadenylation specificity factor subunit 2 OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21 Identity = 73/271 (26.94%), Postives = 126/271 (46.49%), Query Frame = 3 Query: 66 VSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ--FSPDICIIESTYGVQ---LHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKC--MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPS--VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISE 839 +S+ + D D DR + L F Q ++G I Y AGH +GA+++ + ++Y DY+ + HL + +L P + I +S GV + R++ + I+ + GG VLIP GR ELLL ++ YWS + + + + A Q +S ++ + NPF FKHI L+S+++L ++ + V++ S L++G SR+LF WCSD K + + + +LA +I + Sbjct: 106 MSQEEFQQYSLDNIDSCFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHRNEGHLDSLQLTSDILKPSLLITDSK-GVDKTLAFKKTITRDQSLFEQINRNLRDGGNVLIPVDTAGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKFEQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLILFTQKIPKDSLADKLIKQ 375 The following BLAST results are available for this feature:
BLAST of FC872500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872500 ID=FC872500; Name=FC872500; organism=Citrus clementina; type=EST; length=843bpback to top |