FC872504

Overview
NameFC872504
Unique NameFC872504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.357e-34
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            + P   CQ            +SIYG KF  ENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IA CGQL
Sbjct:   56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.357e-34
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            + P   CQ            +SIYG KF  ENF+ KHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E  GS +G+T+K + IA CGQL
Sbjct:   56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.357e-34
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            + P   CQ            +SIYG KF  ENF+ KHTGPGILSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IA CGQL
Sbjct:   56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.170e-33
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            ESIYG KF  ENF +KHTGPG+LSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+VVEG+DVVKA+E  GS SG+  K  +IA CGQL
Sbjct:   83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.903e-33
Identity = 66/109 (60.55%), Postives = 77/109 (70.64%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V P+  CQ            +SIYG+KF  ENF  KHTGPGIL MANAGP TNGSQFF+ TAKT WLD +HVVFG VVEGMDVVK +E +GS SG+TNK + +  CGQ+
Sbjct:   56 VIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.881e-32
Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            + P   CQ            ESIYGSKF  ENF  KHTGPGILSMAN+GP TNGSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++ VVI  CG+L
Sbjct:   63 IIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.763e-32
Identity = 66/109 (60.55%), Postives = 77/109 (70.64%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            + P   CQ            +SIYG KF  ENFV KHTGPG LSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVV GM+VV+ +E+ GS+SG+ +K VVI  CG+L
Sbjct:  207 IIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.915e-32
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V P   CQ            +SIYG KFA ENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IA CGQL
Sbjct:   56 VIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.915e-32
Identity = 69/109 (63.30%), Postives = 75/109 (68.81%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V  +  CQ            ESIYG+KFA ENF  KH G G LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA CGQL
Sbjct:   71 VITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.868e-31
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            + P+   Q            ESIYG KF  ENF +KHTGPG+LSMANAGP TNGSQFF+CT KT WLDGKHVVFG+VVEG+D+V  +E  GSSSG      +IA CGQL
Sbjct:   63 IIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
The following BLAST results are available for this feature:
BLAST of FC872504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
PPIA_SAGOE2.357e-3461.47Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_RABIT2.357e-3462.39Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_AOTTR2.357e-3461.47Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYP3_CAEEL1.170e-3375.28Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIA_BLAGE9.903e-3360.55Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
CP19C_ARATH2.881e-3261.47Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIE_RHIOR3.763e-3260.55Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_HEMPU4.915e-3259.63Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_DICDI4.915e-3263.30Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
CYP7_CAEEL1.868e-3159.63Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AF12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872504 ID=FC872504; Name=FC872504; organism=Citrus clementina; type=EST; length=598bp
GGGGGTTTCCCCGGATTTATGTTGCCAGGGGGGTGACTTCACCGCCGGAA
ACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGTTGAGAAC
TTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGG
TCCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGT
GGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGAC
GTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAA
GCCCGTCGTGATCGCTGCTTGCGGTCAATTGTCTTAGATTTGATCATGAT
AATGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTA
TGTTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCT
AATTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTG
GTTCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAAT
AAGATAGGGCTTGTCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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