FC872504

Overview
NameFC872504
Unique NameFC872504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIAACGQLS 334
            +SIYGS+F  ENF  +HT PG+LSMANAGP +NGSQFF+ T  T WLDGKHVVFG+V+EGMDVV  IEK  ++   + N  VVIA CG LS
Sbjct:  106 KSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLLS 196          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQ 328
            + P   CQ            +SIYG+KF  ENF  KH     LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV G+DVVK +E +GS+SG+ +K ++I  CG+
Sbjct:   54 IIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFS-LSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            +SIYG KFA ENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVFG+V + M++V  IE +GS+SG     VVI  CG L
Sbjct:   73 KSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.296e-24
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 2
Query:   68 SIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS--SGRTNKPVVIAACGQL 331
            SIYGSKF  E+F  KH GPG+LSMANAGP TNGSQFF+CT  T WLD +HVVFG V+EG+DVVK +E   +S       KP  IA  G+L
Sbjct:  155 SIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.693e-24
Identity = 57/109 (52.29%), Postives = 65/109 (59.63%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V PD  CQ             SIYG KF  ENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD VK IE  GS  G  ++ ++I  CGQ+
Sbjct:  977 VIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.211e-24
Identity = 53/89 (59.55%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            ESIYG KF  ENF  KHTG G+LSMANAGP TNGSQFF+   KT WLDG H VFGQ+VEG  V++ +E+ G+ SG     V I  CG++
Sbjct:   86 ESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.772e-24
Identity = 57/109 (52.29%), Postives = 65/109 (59.63%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V PD  CQ            +SIYG KF  ENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD V+ IE  GS  G  ++ + I  CGQL
Sbjct: 2945 VVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.434e-24
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            ESIYG KF  ENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G  VV+A+E + + S R  +  VIA CG+L+
Sbjct:   83 ESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            ESIYG+KF  ENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG+V+ G  VV+ IE + +   +  K  VIA CG+LS
Sbjct:   91 ESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 2
Query:   68 SIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIAACGQL 331
            SIYG +F  ENF  +H G G LSMANAGP TNGSQFF+ T KT WLDGKHVVFG+VVEGM++V+ IE +   S  R  K + IA+CG +
Sbjct:  110 SIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
The following BLAST results are available for this feature:
BLAST of FC872504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
PPIB2_RHIOR2.612e-2563.74Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
PPIA_SCHMA9.926e-2551.85Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIA2_RHIOR9.926e-2560.67Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
CYPB_VICFA1.296e-2461.11Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
RBP2_BOVIN1.693e-2452.29E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
CYP5_RHIOR2.211e-2459.55Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
RBP2_MOUSE3.772e-2452.29E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPID_RHIOR6.434e-2461.11Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_NEUCR8.402e-2461.1141 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIB_SCHMA8.402e-2460.67Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AF12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872504 ID=FC872504; Name=FC872504; organism=Citrus clementina; type=EST; length=598bp
GGGGGTTTCCCCGGATTTATGTTGCCAGGGGGGTGACTTCACCGCCGGAA
ACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGTTGAGAAC
TTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGG
TCCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGT
GGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGAC
GTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAA
GCCCGTCGTGATCGCTGCTTGCGGTCAATTGTCTTAGATTTGATCATGAT
AATGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTA
TGTTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCT
AATTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTG
GTTCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAAT
AAGATAGGGCTTGTCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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