FC872504

Overview
NameFC872504
Unique NameFC872504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.446e-23
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            +SIYG KFA ENF  KH   G+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V   + M +V+ IE +GSSSGRT+  V IA  G L
Sbjct:   75 KSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.290e-23
Identity = 54/89 (60.67%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   68 SIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIAACGQL 331
            SIYG +F  ENF  KH G G LSMANAGP TNG+QFF+ T +  WLDGKHVVFG+VVEGM VV+ IE + + S  R  K V IA CG +
Sbjct:  110 SIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.290e-23
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 2
Query:   68 SIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIAACGQL 331
            SIYGSKF  ENF  KH GPG+LSMANAG  TNG QFF+  AKT++LD KHVVFG+V++GM  V+ IE V + +    K P+V+  CGQL
Sbjct:   95 SIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.213e-22
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            ESIYG KF  ENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ IE + + + +    V IA CG+L+
Sbjct:   86 ESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.213e-22
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            ESIYG KF  ENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ +E + + + +  K V I  CG+L+
Sbjct:   85 ESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.213e-22
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            ESIYG  F  ENF  KH G G+LSMANAGP TNGSQFF+    T WLDG H VFGQ+V+G  V+  +E+ GS SG  +  + I  CG+L
Sbjct:   86 ESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSGMPSAKIEITDCGEL 174          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.585e-22
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIAACGQL 331
            +SIYG +F  ENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K V+I   G++
Sbjct:  116 KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.703e-22
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            ESIYG KF  ENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA CG+L
Sbjct:   96 ESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.703e-22
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   65 ESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            ESIYG KF  ENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  +V+ IE + + + +    V I  CG+LS
Sbjct:   91 ESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.703e-22
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 2
Query:   23 CQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIAACGQLS 334
            CQ            ESIYG KF  E F   H+ P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG+V++G  VV+ IE   +++G   K PVVIA CGQLS
Sbjct:   70 CQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
The following BLAST results are available for this feature:
BLAST of FC872504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
PPIA_STRCH5.446e-2361.54Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
PPIB_SCHJA9.290e-2360.67Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
CYP11_CAEEL9.290e-2359.55Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPID_EMENI1.213e-2256.67Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPOR1.213e-2255.56Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYP6_RHIOR1.213e-2256.18Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPIB_MOUSE1.585e-2257.78Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPID_MOUSE2.703e-2258.4340 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_ASPFU2.703e-2255.56Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_AMAMU2.703e-2253.33Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AF12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872504 ID=FC872504; Name=FC872504; organism=Citrus clementina; type=EST; length=598bp
GGGGGTTTCCCCGGATTTATGTTGCCAGGGGGGTGACTTCACCGCCGGAA
ACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGTTGAGAAC
TTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGG
TCCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGT
GGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGAC
GTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAA
GCCCGTCGTGATCGCTGCTTGCGGTCAATTGTCTTAGATTTGATCATGAT
AATGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTA
TGTTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCT
AATTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTG
GTTCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAAT
AAGATAGGGCTTGTCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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