FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 70/214 (32.71%), Postives = 106/214 (49.53%), Query Frame = 3
Query:  246 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG------AEIVGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            RA I+EF+AT +F++    +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL  A+FY + Q LGA+    +++        +  GG  M   G++   G+G       E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NP+R  G AL+      W   W+
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLR--------LTTGG--MRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWV 223          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 71/205 (34.63%), Postives = 110/205 (53.66%), Query Frame = 3
Query:  219 GELSSWSFYRAGIAEFVATFLFLYITVLTVM--GVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAAL 824
            G+  S +  +A +AEF+AT LF++  V + +  G   +       G+  IA A    +F  V   A  SGGH+NPAVTFGL +   +++ T +FY + Q LGA     +++     +     G    +S G ++ +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP+RS G A+
Sbjct:   10 GDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHG----VSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 59/166 (35.54%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAAL 824
            +G  G+A AFG  +  + Y   GISGGH NPAV+  L +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NP+RS G AL
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVAL 193          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 63/167 (37.72%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGF--QKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPSRSLGAAL 824
            +G  G+A+AFG  +  + Y   GISGGH NPAV+ GL +A K      V Y++ Q LGA+  AA +      K+  E+ G  AN   +    GYS    L  EI+ T   +  +  +T  +       VP+  AP+ IG A+ L+HL +IP+T T +NP+RS G AL
Sbjct:   34 IGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQAL 193          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 69/218 (31.65%), Postives = 111/218 (50.92%), Query Frame = 3
Query:  246 RAGIAEFVATFLFLYITVLTVMGVSK-------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVK----GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            RA +AEF++TF+F++    +++ + K            +  G+  +A A    +FA V     +SGGH+NPAVTF   +  ++S+  A++Y + Q +GAI    +++    G +   +         ++ G S+  GL  EI+ TF LVY V+S A D KR +    + I+APL IG  V    L   P  G  +NP+R+ G AL+      W + WI
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH--------VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALV---GWRWSNHWI 226          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 71/203 (34.98%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A  YM  Q LGA+ GAAV+  +  +   + G  A N L    S G     EI  T   V  +F+  D +RN +   V     L +GF++ L HL  +  TG G+NP+RS   A++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 73/203 (35.96%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A  YM  Q LGA+ GAAV+  +  +   + G  A N L  G S       EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 78/216 (36.11%), Postives = 102/216 (47.22%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGI--QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAV-------VKGFQKSQYEMLGGGANMLSKG-YSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI---YNKDQAW 848
            F R G AEF  TF      VL   G +   +    VGI   G+A AFG  +  + Y    ISGGH NPAVT GL  + +        Y++ Q +GAI  AA        V GF     +    G    S G YS    L  EIV +   V+ +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NP+RS G AL    +  +Q W
Sbjct:    5 FKRCG-AEFFGTFWL----VLGGCGSAVLAAGVPQVGIGYAGVALAFGLTVLTMAYAVGHISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYGDHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVGGWALEQLW 209          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 78/216 (36.11%), Postives = 102/216 (47.22%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGI--QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAV-------VKGFQKSQYEMLGGGANMLSKG-YSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI---YNKDQAW 848
            F R G AEF  TF      VL   G +   +    VGI   G+A AFG  +  + Y    ISGGH NPAVT GL  + +        Y++ Q +GAI  AA        V GF     +    G    S G YS    L  EIV +   V+ +  ATD +  A        AP+PIG A+ L+HL +IP+T T +NP+RS G AL    +  +Q W
Sbjct:    5 FKRCG-AEFFGTFWL----VLGGCGSAVLAAGVPQVGIGYAGVALAFGLTVLTMAYAVGHISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYGDHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVGGWALEQLW 209          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 62/179 (34.64%), Postives = 89/179 (49.72%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVV-------KGFQKSQYEMLGGGANMLSK-GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNK---DQAW 848
            +G  G++ AFG  +  ++Y    ISGGH NPAVT GL+   +      + Y+I Q +G I  AAV+        GF  +       G    S  G+S    + AEIV T + +  +  ATD +        P  APL IG A+ L++L +IPIT T +NP+RS   A+  N    +Q W
Sbjct:   34 IGFVGVSLAFGLTVLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHSPGGFSLQSAIVAEIVLTAIFLIVIIGATDRRA------PPGFAPLAIGLALVLINLISIPITNTSVNPARSTAVAIFQNTWALEQLW 206          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
TIP31_ORYSJ1.267e-2032.71Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP22_MAIZE1.267e-2034.63Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQPZ_BRUSU1.267e-2035.54Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
AQPZ1_AGRT51.267e-2037.72Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
TIP32_ARATH2.161e-2031.65Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
MIP_HUMAN2.161e-2034.98Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CAVPO2.161e-2035.96Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ_BORPA2.161e-2036.11Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR2.161e-2036.11Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQPZ_PHOLL2.822e-2034.64Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
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