FC872661

Overview
NameFC872661
Unique NameFC872661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MAO1_SHESW (NAD-dependent malic enzyme OS=Shewanella sp. (strain W3-18-1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 2
Query:    8 ECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYA-ESCMYSPAYRTYR 424
            E T ++   W+ G+A+ A+GSPF+P       +   Q NN++IFPG+GLG++ SGA  V D M                   G L P  ++I  +S HIA  V   A E GL   LP   ++++ + E   + P YR Y+
Sbjct:  421 EATPKDILHWTSGQALVATGSPFEPVVVDGETYEIAQCNNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGTGPLLPKLEDIHAVSKHIAFAVGKVAVEQGLT--LPMSDEILQQSIEGNFWKPEYRRYK 558          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPC (NAD-dependent malic enzyme OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=sfcA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 2
Query:    8 ECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYA-ESCMYSPAYRTYR 424
            E T ++   W+ G+A+ A+GSPF+P       +   Q NN++IFPG+GLG++ SGA  V D M                   G L P  ++I  +S HIA  V   A E GL   LP   ++++ + E   + P YR Y+
Sbjct:  421 EATPKDILHWTSGQALVATGSPFEPVVVDGETYEIAQCNNSFIFPGIGLGVLASGARHVSDAMLMASSRALAECSPLAIDGTGPLLPKLEDIHAVSKHIAFAVGKVAVEQGLT--LPMSDEILQQSIEGNFWKPEYRRYK 558          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MAO1_IDILO (NAD-dependent malic enzyme OS=Idiomarina loihiensis GN=sfcA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 2
Query:    8 ECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 424
            E    +   WS+G+AI A+GSPF   EY   ++   Q NN+YIFPG+GLG++   + RV D+M               N     L P F ++ ++S  IA  V   A + GLA  +     L +  ++  + P YR Y+
Sbjct:  421 EAHPADVLKWSEGKAIVATGSPFGEVEYDGRIYPIAQCNNSYIFPGIGLGVLSVKSERVSDEMLRVASKTLANASPSANGKGEALLPAFNDLTQLSKDIAFAVGKVAQQEGLALEI-DDDTLRERIDNNFWKPEYRFYK 558          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MAO12_VIBVY (NAD-dependent malic enzyme 2 OS=Vibrio vulnificus (strain YJ016) GN=sfcA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 50/139 (35.97%), Postives = 68/139 (48.92%), Query Frame = 2
Query:    8 ECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 424
            E   E+   W+QG+AI A+GSPF         +   Q NN+YIFPG+GLG+I + A RV ++M               N    +L PP   I+ +S  IA EVA KA E G A+     + L +  E   Y+  Y  YR
Sbjct:  419 EAKPEDILMWTQGQAIVATGSPFPDVVLAGKRYPIAQCNNSYIFPGVGLGVISANAHRVTNEMLQQASITLASLSPMLN-GGNMLLPPLSEIQNVSRKIALEVAKKAVEQGKASHRTEERLLERIDEEFWYA-QYCEYR 555          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MAOX_MYCTU (Putative malate oxidoreductase [NAD] OS=Mycobacterium tuberculosis GN=mez PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 2
Query:    8 ECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 412
            E    +   WS GRA+ A+GSP  P E+ +  +V GQANN   FPG+GLG+I++GA  +   M          Q    N    LL P  +N++ IS  +A  V   A + G+A+R     D+ +     M+ PAY
Sbjct:  416 EAIPADVLAWSNGRALLATGSPVAPVEFDETTYVIGQANNVLAFPGIGLGVIVAGARLITRRMLHAAAKAIAHQANPTNPGDSLL-PDVQNLRAISTTVAEAVYRAAVQDGVASR--THDDVRQAIVDTMWLPAY 547          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MLES_OENOE (Malolactic enzyme OS=Oenococcus oeni GN=mleA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 46/136 (33.82%), Postives = 64/136 (47.06%), Query Frame = 2
Query:    5 SECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 412
            +E  AE+   WS G+A+  +G P D  EY  N +  GQANNA I+PGLG G I + +  +  +M         G V        +L PP   +   S  +A  VA KA E GL  +  P  D+ K  +   + P Y
Sbjct:  409 AEAKAEDVLKWSNGKALIGTGVPVDDIEYEGNAYQIGQANNALIYPGLGFGAIAAQSKLLTPEMISAAAHSLGGIVDTTKVGAAVL-PPVSKLADFSRTVAVAVAKKAVEQGLNRQ--PIDDVEKAVDDLKWDPKY 541          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MAON_SOLTU (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 2
Query:    5 SECTAEEAYTWSQGRAIFASGSPFDPFEYGDN-VFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLA 346
            +EC   +A+  +    +FASGSPF   + G+  +    QANN Y+FPG+GLG ++SGA  + D M           ++ +  ++G+LYP   +I+ I+A + A V   A    LA
Sbjct:  449 AECCPVDAFKLAGEDIVFASGSPFANVDLGNGKIGHVNQANNMYLFPGIGLGALLSGARNISDTMLEAAAECLASYMSDDEINRGILYPSIDDIRDITAEVGAAVLRAAVAEDLA 563          
BLAST of FC872661 vs. ExPASy Swiss-Prot
Match: MLES_LACLA (Malolactic enzyme OS=Lactococcus lactis subsp. lactis GN=mleS PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 47/135 (34.81%), Postives = 64/135 (47.41%), Query Frame = 2
Query:    8 ECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIKKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 412
            E TAE+   WS G+A  A+G P     Y    +  GQANN+ I+PGLGLG++ S A  + D+M         G V        +L PPF+ +  +S  +A  VA KA E GL        D+ K      + P Y
Sbjct:  409 ETTAEQVIEWSDGKAFVATGVPSGTISYKGVDYQIGQANNSLIYPGLGLGMLASEAKLLTDEMIGAAAHSLSGLVDPGKPGAPVL-PPFEFVADVSIKVAEAVAKKAQEQGLTE--SKETDMAKAVRDLKWYPEY 540          
The following BLAST results are available for this feature:
BLAST of FC872661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
MAO1_SHESW6.690e-1433.57NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHEPC6.690e-1433.57NAD-dependent malic enzyme OS=Shewanella putrefaci... [more]
MAO1_IDILO6.690e-1432.37NAD-dependent malic enzyme OS=Idiomarina loihiensi... [more]
MAO12_VIBVY1.141e-1335.97NAD-dependent malic enzyme 2 OS=Vibrio vulnificus ... [more]
MAOX_MYCTU1.947e-1334.81Putative malate oxidoreductase [NAD] OS=Mycobacter... [more]
MLES_OENOE3.320e-1333.82Malolactic enzyme OS=Oenococcus oeni GN=mleA PE=3 ... [more]
MAON_SOLTU1.648e-1233.91NAD-dependent malic enzyme 59 kDa isoform, mitocho... [more]
MLES_LACLA2.811e-1234.81Malolactic enzyme OS=Lactococcus lactis subsp. lac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872661 ID=FC872661; Name=FC872661; organism=Citrus clementina; type=EST; length=732bp
GGGGTCTGAATGCACCGCAGAAGAAGCCTATACGTGGAGCCAGGGCCGAG
CCATTTTTGCAAGTGGGAGCCCCTTTGACCCTTTCGAATATGGGGACAAT
GTTTTTGTGCCTGGCCAGGCAAATAATGCATACATTTTCCCTGGACTTGG
TTTGGGGTTAATAATGTCTGGTGCAATCCGTGTTCATGATGACATGCTTC
TGGCAGCAGCGGAAGCATTGGCTGGACAAGTAACACAGGAAAACTTTGAC
AAGGGACTCCTTTACCCTCCATTTAAGAACATCAAAAAGATTTCAGCTCA
TATTGCTGCAGAGGTAGCTGCAAAAGCATACGAACTTGGTTTGGCAACTC
GCCTCCCTCCGCCTAAGGACCTGGTGAAGTATGCTGAGAGCTGCATGTAC
AGCCCTGCTTATCGAACCTACCGGTGAAATGGGAGGAATTCAATACAATT
GCTGTTTTGGAGTTCACATTACTCGTAATACTAGTCTGTTCTTTTATTTT
TTTACCTTGGGCTCCTTTTTAAAATGGTACTCCCTCTTCCTCCTTTCTTC
TGTGAAGTCACATAAGTTACCCTGGTGGGTAAGAATCAGCATGGTGGGTA
GTGGTAGGTGCATCTAGCAAAGTAAAAAAATATAGCATGAAAAATGATGT
TGTTGTGGACTTGGAAATTCTACATGAAATGAAATTCAGGTTAACCGTTC
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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