FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.495e-20
Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   63 IPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLK-EPIGVVGLI 524
            IP  QLFIN EW++ V KK  P VNPTT E++G +      DV+ AV AAR+A     G  W     + R + L  +A  +   +  LA+LET+D GKP +E+   D+D+V   + Y+A  A+    K     ++PM+       + EPIGV G I
Sbjct:   34 IPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAF--RLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGK-----TIPMDGQHFCFTRHEPIGVCGQI 182          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.495e-20
Identity = 62/177 (35.03%), Postives = 92/177 (51.98%), Query Frame = 3
Query:   15 KSKKTERKGKMAMAIPIPS-----RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLK-EPIGVVGLI 524
            + + T      A+  PIP+      +LFIN EW + V KK  P VNPTT E++G +      DV+LAV AAR+A     G  W     + R + L  +A  +   +  LA+LET+D GKP +E+ V D+D+V   + Y+A  A+    K     ++PM+       + EP+GV G I
Sbjct:   15 QGRTTSYSTAAALPNPIPNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAF--RLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGK-----TIPMDGEHFCFTRHEPVGVCGQI 184          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 63/177 (35.59%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   15 KSKKTERKGKMAMAIPIPS-----RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLK-EPIGVVGLI 524
            + + T      A+  PIP+      QLFIN EW + V KK  P VNPTT E++G +      DV+LAV AAR+A     G  W     + R + L  +A  +   +  LA+LET+D GKP +E+ V D+D+V   + Y A  A+    K     ++PM+       + EP+GV G I
Sbjct:   15 QGRTTSYSTAAALPNPIPNPEIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAF--RLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYLAGWADKWHGK-----TIPMDGEHFCFTRHEPVGVCGQI 184          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 3
Query:   63 IPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLK-EPIGVVGLI 524
            IP  QLFIN EW++ V KK  P VNPTT E++G +      DV+ AV AAR+A     G  W     + R + L  +A  +   +  LA+LET+D GKP +E+   D+D+V   + Y+A  A+    K     ++PM+       + EP+GV G I
Sbjct:   34 IPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAF--RLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGK-----TIPMDGQHFCFTRHEPVGVCGQI 182          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   54 AIPIPSRQ-------LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP-LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            A+P P++Q       +FIN EW + V KK  P VNP+T E++  + A   EDV+ AV AAR A     G  W     + R + L  +A  I   ++ LA LET+D GKP +   + D+D V  C  YYA  A+    K     ++P++ +F S    EP+GV G I
Sbjct:    7 AVPAPNQQPEVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAF--QLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK-----TIPIDGDFFSYTRHEPVGVCGQI 165          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 60/166 (36.14%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   54 AIPIPSRQ-------LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP-LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            A+P P++Q       +FIN EW + V KK  P VNP+T E++  +   + EDV+ AV AAR A     G  W     + R + L  +A  I   ++ LA LET+D GKP +   + D+D V  C  YYA  A+    K     ++P++ +F S    EP+GV G I
Sbjct:    7 AVPAPNQQPEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGSKEDVDKAVKAARAAF--QLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK-----TIPIDGDFFSYTRHEPVGVCGQI 165          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 59/166 (35.54%), Postives = 86/166 (51.81%), Query Frame = 3
Query:   54 AIPIPSRQ-------LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP-LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            A+P P++Q       +FIN EW + V +K  P VNP+T E++  +     EDV+ AV AAR A     G  W     + R + L  +A  I   ++ LA LET+D GKP +   + D+D V  C  YYA  A+    K     ++P++ +F S    EP+GV G I
Sbjct:   24 AVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAF--QLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK-----TIPIDGDFFSYTRHEPVGVCGQI 182          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 59/166 (35.54%), Postives = 86/166 (51.81%), Query Frame = 3
Query:   54 AIPIPSRQ-------LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP-LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            A+P P++Q       +FIN EW + V +K  P VNP+T E++  +     EDV+ AV AAR A     G  W     + R + L  +A  I   ++ LA LET+D GKP +   + D+D V  C  YYA  A+    K     ++P++ +F S    EP+GV G I
Sbjct:   24 AVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAF--QLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK-----TIPIDGDFFSYTRHEPVGVCGQI 182          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   54 AIPIPSRQ-------LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP-LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            A+P P++Q       +FIN EW + + KK  P VNP+T +++  +     EDV+ AV+AAR A     G  W     + R + L  +A  I   ++ LA LET+D GKP +   + D+D V  C  YYA  A+    K     +LP++ ++ S    EP+GV G I
Sbjct:   28 AVPAPNQQPEIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAF--QLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK-----TLPIDGDYFSYTRHEPVGVCGQI 186          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 59/166 (35.54%), Postives = 86/166 (51.81%), Query Frame = 3
Query:   54 AIPIPSRQ-------LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKP-LEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            A+P P++Q       +FIN EW + V KK  P VNP+T E++  +     EDV+ AV AA+ A     G  W     + R + L  +A  I   ++ LA LET+D GKP +   + D+D V  C  YYA  A+    K     ++P++ +F S    EP+GV G I
Sbjct:   26 AVPAPNQQPEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAAQAAF--QLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK-----TIPIDGDFFSYTRHEPVGVCGQI 184          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
AL1B1_PONAB9.495e-2037.82Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_MOUSE9.495e-2035.03Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1B1_RAT1.240e-1935.59Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1B1_HUMAN1.620e-1937.18Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ALDH2_HORSE1.791e-1836.75Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_MESAU3.989e-1836.14Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_PONAB8.887e-1835.54Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN8.887e-1835.54Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_PIG1.516e-1734.94Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
ALDH2_RAT2.586e-1735.54Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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