FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_BURMA (Betaine aldehyde dehydrogenase OS=Burkholderia mallei GN=betB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 48/148 (32.43%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGV 512
            ++L+I G   +    K     +P T E++  +  A+A+DV+ AV +AR+       ++W++ +   R++ LR     + ER   LA LE  D GKP+ E    DI   A   EYYA LA  ++  Q   V L  E+F     +EP+GV
Sbjct:    7 QRLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQ-----REWAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQ---VPLRPESFVY-TRREPLGV 145          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_BURM9 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=betB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 48/148 (32.43%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGV 512
            ++L+I G   +    K     +P T E++  +  A+A+DV+ AV +AR+       ++W++ +   R++ LR     + ER   LA LE  D GKP+ E    DI   A   EYYA LA  ++  Q   V L  E+F     +EP+GV
Sbjct:    7 QRLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQ-----REWAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQ---VPLRPESFVY-TRREPLGV 145          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_BURM7 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=betB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 48/148 (32.43%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGV 512
            ++L+I G   +    K     +P T E++  +  A+A+DV+ AV +AR+       ++W++ +   R++ LR     + ER   LA LE  D GKP+ E    DI   A   EYYA LA  ++  Q   V L  E+F     +EP+GV
Sbjct:    7 QRLYIAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQ-----REWAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGLQ---VPLRPESFVY-TRREPLGV 145          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ABDH_ENT38 (Gamma-aminobutyraldehyde dehydrogenase OS=Enterobacter sp. (strain 638) GN=Ent638_2124 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 51/151 (33.77%), Postives = 75/151 (49.67%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            QL INGE      +K+ P+ NP T E++ +I  A+A  V+ AV AA +A S     +W   +   RA+ L  +A  I E     A LE+ +CGKPL   + D I  V   F ++A  A  L+          +E   S + ++P+GVV  I
Sbjct:    4 QLLINGELVNGEGEKQ-PVYNPATGEVLLEIAEASAAQVDAAVRAADRAFS-----EWGHTTPKARAECLLKLADVIEEHAETFARLESQNCGKPLHCVISDEIPAVVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPVGVVASI 145          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
BETB_BURMA8.057e-1132.43Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM98.057e-1132.43Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM78.057e-1132.43Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
ABDH_ENT388.057e-1133.77Gamma-aminobutyraldehyde dehydrogenase OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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