FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 3
Query:   54 AIPIPSRQL-------FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPM-ENFKS*VLKEPIGVVGLIT 527
            A+P P R L       FIN +W EP   ++    NP+T E + ++      DV+ AV+AA+ A    RG  W       R + L  +A  I   ++ LA LET+D GKP   A + D++     F Y+A  A+ +  +     ++P  +N       EPIGV G IT
Sbjct:   19 ALPRPIRNLEVKFTKIFINNDWHEPKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAF--QRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGR-----TIPTDDNVMCFTRHEPIGVCGAIT 178          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAB (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=aldA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 53/150 (35.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV+ A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVEVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   39 GKMAMAIP-IPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            G   + +P I   +LFING++ +    K    ++P   E++  I     EDV+LAV+AAR A        W   +G  RAK +   A  I E   ELA L+ +D GK  +   + DI   AG F Y A  A+ +  +    + +  ++     LKEPIGVVG I
Sbjct:    8 GATTVKLPEIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHG---PWPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIPATAGHFRYNAGAADKIHGE---TLKMTRQSLFGYTLKEPIGVVGNI 165          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 53/160 (33.12%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   57 IPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            + I   ++FIN EW + V  K+ P+ NP TEE +  +     EDV+ AV AARQA     G  W +   + R + L  +A  I   +  LA +E+++ GK    A   ++D+AGC +   Y A  A+ +  +     ++P++ NF +    EPIGV G I
Sbjct:   16 LKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAF--QIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAY--LNDLAGCIKTLRYCAGWADKIQGR-----TIPIDGNFFTYTRHEPIGVCGQI 166          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: LADH_META3 (Lactaldehyde dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1030 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 46/150 (30.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +FINGEW   + +K I + NP   EI+G IP+ +  + + A+  A +  S  +     + S   R   L  IA+++++ K ELA L TID GKP+++++ ++D     F++ A  +  L  +     ++P ++      +EP+G+VG IT
Sbjct:    1 MFINGEW---INRKDIEVKNPYNNEIIGYIPSLSRNETKEAIKIAEEHKSTMK-----NLSPTIRYNILMKIASELSKNKRELAKLITIDVGKPIKQSIIEVDRTITTFKFSAFYSRELRGE-----TIPFDDGMVITKREPVGLVGAIT 137          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAK--QKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFIN E+ + V  K   ++NP+TEE++  +  AT +DV++AV AAR+A +      W   +   R K L  +A    +    +A +E +D GK    A   D+   AGC  YY   A+ ++ K    AP S    N+   + KEPIGV G I
Sbjct:   20 LFINNEFVKAVDGKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN----GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAFSMAKNVDVPAAAGCLRYYGGWADKIEGKVVDTAPDSF---NY---IRKEPIGVCGQI 161          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA2_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus cereus (strain ZK / E33L) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 3
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +I GEW E +  K   + NP T E++  +P +T  DVE AV AA +A      K WS  +   RA+ L      + +   ELA L TI+ GK   EA  ++     C E+ A     +  KQ   ++  +E   S + + PIGV+G IT
Sbjct:   13 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVSAANEAF-----KSWSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIE---SGMYRYPIGVIGGIT 153          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAW (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MW2) GN=aldA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAR (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MRSA252) GN=aldA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAN (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain N315) GN=aldA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
AL1A3_RAT7.785e-1432.34Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
ALDA_STAAB1.017e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
AL2C4_ARATH1.017e-1333.54Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL1A1_HUMAN1.017e-1333.13Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
LADH_META31.734e-1330.67Lactaldehyde dehydrogenase OS=Methanococcus aeolic... [more]
ALDH_ALTAL1.734e-1334.87Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
IOLA2_BACCZ2.265e-1333.56Methylmalonate semialdehyde dehydrogenase [acylati... [more]
ALDA_STAAW2.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAR2.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAN2.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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