FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAM (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=aldA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAC (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain COL) GN=aldA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAA8 (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain NCTC 8325) GN=aldA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAA3 (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain USA300) GN=aldA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A++A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 3
Query:   57 IPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            + I   ++FIN EW + V  K+ P++NP TEE++  +      DV+ AV AARQA     G  W +   + R + L  +A  +   +  LA +E+++ GK    A + D++      +Y+A  A+ +  +     ++P + N  +   +EPIGV G I
Sbjct:   16 LKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAF--QIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQ-----TIPSDGNIFTYTRREPIGVCGQI 166          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 54/167 (32.34%), Postives = 78/167 (46.71%), Query Frame = 3
Query:   54 AIPIPSRQL-------FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPM-ENFKS*VLKEPIGVVGLIT 527
            A+P P R L       FIN EW E    K+    NP+T E + ++      DV+ AV+AA+ A    RG  W       R + L  +A  +   ++ LA LET+D GKP   A + D++       Y+A  A+ +  K     ++P  +N       EPIGV G IT
Sbjct:   19 ALPRPIRNLEVKFTKIFINNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAF--QRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGK-----TIPTDDNVVCFTRHEPIGVCGAIT 178          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            ++FIN EW   V  K+ P+ NP TEE + ++     EDV+ AV AARQA     G  W +   + R + L  +A  I   +  LA +E ++ GK    A   + D+ GC +   Y A  A+ +  +     ++PM+ NF +    EP+GV G I
Sbjct:   22 KIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAF--QIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAY--LMDLGGCIKTLRYCAGWADKIQGR-----TIPMDGNFFTYTRSEPVGVCGQI 166          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAAS (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MSSA476) GN=aldA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.864e-13
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE+ +    + I + NP T E +  I  A  +DV+ AV  A+ A      + WS  S + RA+ LR I  K+  +K ++A +ET++ GKP+ E    DI   A  F Y+A + E     ++  V+   ++  S V  EPIGVVG +
Sbjct:   15 LFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQDAF-----ESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIE----TEEGTVNDIDKDTMSIVRHEPIGVVGAV 155          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            Q  I G+W +    K I + NP T EI+ D+     ++   A+ ++ +A +      WS  +   R+K LR     +   K EL  L T++ GKPL+EA+ ++   A   EYYA+ A+ +      P    + + +  VLK+P+GVVG IT
Sbjct:   54 QGLIGGKWLDSYDNKTIKVNNPATGEIIADVACMGTKETNDAIASSYEAFT-----SWSRLTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPLKEAIGEVAYGASFIEYYAEEAKRVYGDIIPP---NLSDRRLLVLKQPVGVVGAIT 196          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIBY (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/148 (35.14%), Postives = 76/148 (51.35%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            QL+I+G + E    K    +NP   EI+  +  A+ +D+E AV +A+Q       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 QLYIHGRYVEATSGKTFNSINPANGEIIATLQQASEQDIEAAVKSAQQG-----QKIWAAMTAMERSRILRRAVDILRERNDELARLETLDTGKAYSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
ALDA_STAAM2.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAC2.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAA82.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAA32.265e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
AL1A7_MOUSE2.265e-1329.75Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A3_HUMAN2.265e-1332.34Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
AL1A1_SHEEP2.265e-1333.12Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
ALDA_STAAS3.864e-1335.33Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
SSDH_ARATH5.046e-1331.79Succinate-semialdehyde dehydrogenase, mitochondria... [more]
BETB_ACIBY5.046e-1335.14Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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