FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIBT (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=betB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/148 (35.14%), Postives = 76/148 (51.35%), Query Frame = 3 
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            QL+I+G + E    K    +NP   EI+  +  A+ +D+E AV +A+Q       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 QLYIHGRYVEATSGKTFNSINPANGEIIATLQQASEQDIEAAVKSAQQG-----QKIWAAMTAMERSRILRRAVDILRERNDELARLETLDTGKAYSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIBS (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/148 (35.14%), Postives = 76/148 (51.35%), Query Frame = 3 
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            QL+I+G + E    K    +NP   EI+  +  A+ +D+E AV +A+Q       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 QLYIHGRYVEATSGKTFNSINPANGEIIATLQQASEQDIEAAVKSAQQG-----QKIWAAMTAMERSRILRRAVDILRERNDELARLETLDTGKAYSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIBC (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/148 (35.14%), Postives = 76/148 (51.35%), Query Frame = 3 
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            QL+I+G + E    K    +NP   EI+  +  A+ +D+E AV +A+Q       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 QLYIHGRYVEATSGKTFNSINPANGEIIATLQQASEQDIEAAVKSAQQG-----QKIWAAMTAMERSRILRRAVDILRERNDELARLETLDTGKAYSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIB5 (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/148 (35.14%), Postives = 76/148 (51.35%), Query Frame = 3 
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            QL+I+G + E    K    +NP   EI+  +  A+ +D+E AV +A+Q       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 QLYIHGRYVEATSGKTFNSINPANGEIIATLQQASEQDIEAAVKSAQQG-----QKIWAAMTAMERSRILRRAVDILRERNDELARLETLDTGKAYSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIB3 (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/148 (35.14%), Postives = 76/148 (51.35%), Query Frame = 3 
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            QL+I+G + E    K    +NP   EI+  +  A+ +D+E AV +A+Q       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 QLYIHGRYVEATSGKTFNSINPANGEIIATLQQASEQDIEAAVKSAQQG-----QKIWAAMTAMERSRILRRAVDILRERNDELARLETLDTGKAYSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 52/160 (32.50%), Postives = 82/160 (51.25%), Query Frame = 3 
Query:   57 IPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            + I   ++FIN EW + V  K+ P+ NP TEE +  +      DV+ AV AARQA     G  W +   + R + L  +A  I   +  LA +E+++ GK    A   ++D+AGC +   Y A  A+ +  +     ++P++ NF +    EPIGV G I
Sbjct:   16 LKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAF--QIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAY--LNDLAGCIKTLRYCAGWADKIQGR-----TIPIDGNFFTYTRHEPIGVCGQI 166
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 3 
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            ++FIN EW   V  K+ P+ NP TEE + ++     EDV+ AV AARQA     G  W +   + R + L  +A  I      LA +E ++ GK    A   + D+ GC +   Y A  A+ +  +     ++PM+ NF +    EP+GV G I
Sbjct:   22 KIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAF--QIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAY--LMDLGGCIKTLRYCAGWADKIQGR-----TIPMDGNFFTYTRSEPVGVCGQI 166
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA2_BACHK (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus thuringiensis subsp. konkukian GN=iolA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 3 
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +I GEW E +  K   + NP T E++  +P +T  DVE AV AA +A      K WS  +   RA+ L      + +   ELA L TI+ GK   EA  ++     C E+ A     +  KQ   ++  +E   S + + PIGV+G IT
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVLAANEAF-----KSWSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIE---SGMYRYPIGVIGGIT 152
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA2_BACAN (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus anthracis GN=iolA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 3 
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +I GEW E +  K   + NP T E++  +P +T  DVE AV AA +A      K WS  +   RA+ L      + +   ELA L TI+ GK   EA  ++     C E+ A     +  KQ   ++  +E   S + + PIGV+G IT
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVLAANEAF-----KSWSKTAVPRRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIE---SGMYRYPIGVIGGIT 152
[Close]
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA2_BACAH (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus thuringiensis (strain Al Hakam) GN=iolA2 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 3 
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +I GEW E +  K   + NP T E++  +P +T  DVE AV AA +A      K WS  +   RA+ L      + +   ELA L TI+ GK   EA  ++     C E+ A     +  KQ   ++  +E   S + + PIGV+G IT
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKGDVEQAVLAANEAF-----KSWSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIE---SGMYRYPIGVIGGIT 152
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
BETB_ACIBT5.046e-1335.14Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_ACIBS5.046e-1335.14Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_ACIBC5.046e-1335.14Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_ACIB55.046e-1335.14Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_ACIB35.046e-1335.14Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
AL1A1_MACFA5.046e-1332.50Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_BOVIN5.046e-1333.12Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
IOLA2_BACHK6.591e-1333.56Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACAN6.591e-1333.56Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACAH6.591e-1333.56Methylmalonate semialdehyde dehydrogenase [acylati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
back to top