FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA2_BACLD (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 3
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVG 518
            +INGEW E    K   +VNP T+E++  +P +T ED+E A   A +A      K WS  +   RA+ L      +T+ K ELA+L TI+ GK  +EA+ ++       E+ A     +     A ++  +E       + PIGVVG
Sbjct:   10 YINGEWVESKTDKYEDVVNPATKEVLCQVPISTREDIEYAAQTAAEAF-----KTWSKVAVPRRARILFNFQQLLTQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLATIATDVEAAN---YRYPIGVVG 147          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            +L+I+G++ +    K    +NP T E++  I  A+  D+E AV +A +       K W++ +   R++ LR     + ER  ELA LET+D GK   E +  DI   A   EYYA LA  +  +Q   V L   +F     +EP+GVV
Sbjct:    8 RLYIHGQYTDATSGKTFDSINPATGEVIATIQQASQTDIEAAVKSAAEGQ-----KVWAAKTAVERSRILRRAVDILRERNDELAQLETLDTGKAFSETSTVDIVTGADVLEYYAGLATAIQGEQ---VPLRESSFFY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFIN +  + V   R+ + +P+TE+++ ++  A  EDV++AV  AR A   +    W   S A R + L  +A  I +    LA++ET+D GK +  A  D+   A CF YY   A   D      +   ++ F +    EPIGV G I
Sbjct:   25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDA--PWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWA---DKDYGQTIETDIKRF-AYTRHEPIGVCGQI 167          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: SSDH2_SCHPO (Putative succinate-semialdehyde dehydrogenase C139.05 [NADP+] OS=Schizosaccharomyces pombe GN=SPAC139.05 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDA-KQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            Q F+ G+W      K   + NP T EI+G +   + E+ + A+ AA +A      K + + +   R++ L   A  I E K +L  + T++ GKPL +A  ++   +G  ++YA  AE +      AP SL  +NF    +K+P+GV  LIT
Sbjct:   19 QSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAF-----KTYKNFTHVQRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYA--AEAVRTFGDVAPSSLQSQNFLI-SIKQPVGVSALIT 162          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_XANAC (Betaine aldehyde dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=betB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = 3
Query:   66 PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGC--FEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            P + L+I G +        + +VNP T E++ ++  A  +D++ AVD+A+    R     W++ +   R++ L    A + ER   LA LET++ GKPL E    +D V G    EYYA +A+ L   Q A V L   +F      EP+GVVG I
Sbjct:    5 PDQLLYIGGRYVPARGGHTLEVVNPATGEVLANVHNAGVDDLDAAVDSAKAGQQR-----WAALTTVERSRILLRAVALLRERNDALAQLETLNTGKPLSE-TRSVDVVTGADVLEYYAGVAQAL---QGAQVPLREGSFFY-TRHEPLGVVGAI 149          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 3
Query:   42 KMAMAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            +MA  +     +L ING++   V  K   +VNP  E+++ ++  A   DV+LAV AAR A    R  D       +R   +  +A  + +   E+A LE++D GKP E A+  D+     CF Y A LA+    K    V     NF   V ++PIGV G I
Sbjct:   10 EMAPKVTHIQEKLLINGKFVPAVSGKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFESFRMTDCQ-----WRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLAD----KVNGTVPPRSGNFLGIVKRQPIGVCGQI 162          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDA_STAHJ (Putative aldehyde dehydrogenase aldA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=aldA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFINGE++       + + NP   E +  +  A+  DV+ AV AA+ A        WS  S   RA YL  I+ +I E+    A +E++  GKP  E +  D+   A  F+Y+A +        +  V+   EN  S V+ EP+GVVG +
Sbjct:   16 LFINGEFQASESGDTLTVTNPANGEDLAKVAKASKSDVDKAVQAAQDAFD-----SWSKTSKEERADYLLEISRRIHEKVEHFATIESLQNGKPYRETSTIDVPLTANQFKYFASVL----TTDEGSVNEIDENTMSLVVNEPVGVVGAV 156          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   54 AIPIPSRQL-------FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPM-ENFKS*VLKEPIGVVGLIT 527
            A+P P R L       FIN +W E    ++    NP+T E + ++      DV+ AV+AA+ A    RG  W       R + L  +A  +   ++ LA LET+D GKP   A + D++     F Y+A  A+ +  +     ++P  +N       EPIGV G IT
Sbjct:   19 ALPRPIRNLEVKFTKIFINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAF--QRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGR-----TIPTDDNVVCFTRHEPIGVCGAIT 178          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA3_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 3 OS=Bacillus cereus (strain ZK / E33L) GN=iolA3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 3
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +I GEW E +  K   + NP T E++  +P +T  DVE AV AA +A      K WS  +   RA+ L      + +   +LA L TI+ GK   EA  ++     C E+ A     +  KQ   ++  +E   S + + PIGV+G IT
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVLAANEAF-----KSWSKTAVPKRARILFKYQQLLVDNWEDLAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIE---SGMYRYPIGVIGGIT 152          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_ERWCT (Betaine aldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=betB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 55/149 (36.91%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            +QL+ING + +         VNP   +I+  I +ATA DV+ AV AA         K W++ +   R++ LR     + ER  ELA LET D GKPL E    DI   A   EYYA L   L+ +Q   + L   +F     +EP+GVV
Sbjct:    7 QQLYINGAYVDSTGNDTFDAVNPANGDIIACIQSATAADVDRAVSAATAGQ-----KVWAAMTAMERSRILRRAVDILRERNDELALLETHDTGKPLSETRTVDIVTGADVLEYYAGLIPMLEGQQ---IPLRDTSFVY-TRREPLGVV 146          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
IOLA2_BACLD8.608e-1332.88Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_ACIAD8.608e-1333.78Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
YF19_SCHPO1.124e-1232.89Putative aldehyde dehydrogenase-like protein C9E9.... [more]
SSDH2_SCHPO1.124e-1231.58Putative succinate-semialdehyde dehydrogenase C139... [more]
BETB_XANAC1.124e-1234.19Betaine aldehyde dehydrogenase OS=Xanthomonas axon... [more]
ALDH2_LEITA1.124e-1233.33Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
ALDA_STAHJ1.124e-1232.67Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
AL1A3_MOUSE1.124e-1231.14Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
IOLA3_BACCZ1.468e-1232.89Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_ERWCT1.918e-1236.91Betaine aldehyde dehydrogenase OS=Erwinia carotovo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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