FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 3
Query:   78 LFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            LFIN E+ +    K   ++NP+ E ++  +  AT +DV++AV AAR+A   +    W   +   R K L  +A    +    LA +E++D GK +  A  DI    GC  YY   A+ +  K    +    + F   V KEPIGV G I
Sbjct:   20 LFINNEFVKGQEGKTFDVINPSDESVITQVHEATEKDVDIAVAAARKAFEGS----WRQETPENRGKLLNNLANLFEKNIDLLAAVESLDNGKAISMAKGDISMCVGCLRYYGGWADKITGK---VIDTTPDTFNY-VKKEPIGVCGQI 160          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA_BACP2 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus pumilus (strain SAFR-032) GN=iolA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.505e-12
Identity = 46/149 (30.87%), Postives = 76/149 (51.01%), Query Frame = 3
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            +I G+W E    +   + NP T +I+ ++P +T +DVE AV AA++A +      WS      RA+ L      + ++  ELA L T++ GK + EA  ++     C E+ A     +  KQ   ++  +E   S + + PIGV+G IT
Sbjct:   12 YIGGQWIEAETSQTEAVYNPATGKIIAEVPLSTKKDVERAVQAAQEAFT-----TWSKTPVPRRARILFKYQQLLVDKWDELAELVTMENGKSITEAKGEVQRGIECVEFAAGAPTLMMGKQLPDIASGLE---SGMYRYPIGVIGGIT 152          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.505e-12
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 3
Query:   57 IPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            + I   ++FIN EW+     +  P+ NP T E V ++  A   D++ AV AAR A S   G  W     + R + L  +A  +   ++ LA +E+++ GKP  +A + D+  V   F YYA  A+ +       +++P++ ++ +    EPIGV G I
Sbjct:   33 LEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFS--LGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHG-----MTIPVDGDYFTFTRHEPIGVCGQI 183          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 48/154 (31.17%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLP--MENFKS*VLKEPIGVVGLIT 527
            +Q  INGEW +    + I + NP   + +G +P   A++   A+DAA +AL       W + +   RA  LR     + E + +LA L T++ GKPL EA  +I   A   E++A+     + K+    ++P    + +  V+K+PIGV   IT
Sbjct:   11 QQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPA-----WRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAE-----EGKRIYGDTIPGHQADKRLIVIKQPIGVTAAIT 154          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEE-AVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            ++L+ING + +    K    VNP   E++ +I +A+AEDV  AV +A         K W++ +   R++ LR     + ER  ELA LET+D GK + E    DI   A   EYYA L   ++ +Q   + L   +F     +EP+GVV
Sbjct:    7 QKLYINGAYVDSTDGKTFNAVNPANGEVLAEIQSASAEDVNRAVASAASG-----QKVWAAMTAMARSRILRRAVDILRERNDELAALETLDTGKAMSETTAVDIVTGADVLEYYAGLIPSIEGQQ---IPLRDTSFVY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            +QL+I G++      +    +NP T E++  +  A+  DV+ AV +A +       K W++ +   R++ LR     + ER  ELA LET+D GKPL E  + DI   A   EYYA L   ++ +Q   + L   +F     +EP+GVV
Sbjct:    7 QQLYIGGQYVAASSGQTFDSINPATGEVLAKVQRASQADVDRAVASAAEGQ-----KVWAAMTAMQRSRILRRAVDILRERNDELAELETLDTGKPLSETRYVDIVTGADVLEYYAGLIPAIEGEQ---IPLRESSFVY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 53/150 (35.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFK-S*VLKEPIGVV 515
            +QL+ING + +         VNP   EI+  + +AT  DV+ AV AA         K W++ +   R++ LR     + ER  ELA LET D GKPL E    DI   A   EYYA L   L+ +Q     +P+ +   +   +EP+GVV
Sbjct:    7 QQLYINGAYVDSTGDDTFDAVNPANGEIIAQLQSATVADVDRAVIAAAAGQ-----KIWAAMTAMERSRILRRAVDILRERNDELALLETHDTGKPLSETRTVDIVTGADVLEYYAGLIPMLEGQQ-----IPLRDTSFAYTRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 51/160 (31.87%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   57 IPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            + I   ++FIN EW + V  K+ P++NP TEE +  I      DV+ AV AARQA     G  W +   + R + L  +A  I   +  LA +E+++ GK    A   + D+ GC +   Y A  A+ +  +     ++PM+ +F      EP+GV G I
Sbjct:   11 LKIQYTKIFINNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAF--QIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAY--LMDLGGCIKTLRYCAGWADKIQGR-----TMPMDGDFFCYTRHEPVGVCGQI 161          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 49/154 (31.82%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   75 QLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPME-NFKS*VLKEPIGVVGLI 524
            ++FIN EW + V  K+ P+ NP TEE + ++     EDV  AV AARQA     G  W +   + R + L  +A  +   +  LA +E+++ GK    A   + D+ GC +   Y A  A+ +  +     ++P + NF +    EP+GV G I
Sbjct:   21 KIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAF--QIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAY--LMDLGGCLKTLRYCAGWADKIQGR-----TIPSDGNFFTYTRHEPVGVCGQI 165          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: PUUC_ECOLI (Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=puuC PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   48 AMAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLI 524
            A+++ I +R LFINGE+      +    V+P T+  +  I    + D++ A+ AAR    R    DWS +S A R   L  +A  +     ELA LET+D GKP+  ++   DD+ G        AE +D K    V+    +  + +++EP+GV+  I
Sbjct:   13 ALSLAIENR-LFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAMSAARGVFERG---DWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSL--RDDIPGAARAIRWYAEAID-KVYGEVATTSSHELAMIVREPVGVIAAI 164          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
ALDH_CLAHE1.918e-1232.89Aldehyde dehydrogenase OS=Cladosporium herbarum GN... [more]
IOLA_BACP22.505e-1230.87Methylmalonate semialdehyde dehydrogenase [acylati... [more]
AL1A2_HUMAN2.505e-1230.38Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
GABD_ECOLI3.271e-1231.17Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
BETB_SERP53.271e-1234.23Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_PSEMY3.271e-1232.89Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
BETB_PECCP3.271e-1235.33Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
AL1A1_RABIT3.271e-1231.88Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL1A1_HORSE3.271e-1231.82Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
PUUC_ECOLI4.272e-1231.45Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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