FC872663

Overview
NameFC872663
Unique NameFC872663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA_BACHD (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus halodurans GN=iolA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 3
Query:   81 FINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            FI G+W E    K   + NP T EI+  +P +  ED++ AV  A++A      K W       RA+ L      + E   ELA L T++ GK  +EA  ++     C E+ A     +  KQ   ++    N +S + + PIGVVG IT
Sbjct:   13 FIGGQWVESDSGKTEAVPNPATGEILAHVPISNREDLDRAVSVAKEAF-----KTWGKTPVPRRARVLFKYQQLLVENWEELARLVTLENGKSYKEAYGEVQRGIECVEFAAGAPSLMMGKQLPDIA---TNIESGMYRYPIGVVGGIT 153          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOTN (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=iolA1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 50/159 (31.45%), Postives = 77/159 (48.43%), Query Frame = 3
Query:   51 MAIPIPSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVVGLIT 527
            M   + + + +I G+W E    K   + NP T E++  +P +T ED++ AV AA++A      K WS      RA+ L      + E   ELA L T++ GK   EA  +I     C E+ A     +  +Q   ++  +E   S + + PIGVVG IT
Sbjct:    1 MTTGVQTLKNYIGGQWVESRSAKTEAVPNPATGEVLAYVPISTREDLDRAVAAAKEAF-----KTWSKTPVPRRARILFKYQQLLVEHWEELARLVTLENGKSYNEAYGEIQRGIECVEFAAGAPTLMMGRQLPSIATGIE---SGMYRYPIGVVGGIT 151          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_XANCP (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 3
Query:   66 PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPM-ENFKS*VLKEPIGVVGLI 524
            P + L+I G +          +VNP T E++ ++  A A+D++ AVD+A+        + W++ +   R++ L    A + ER   LA LET++ GKPL E    DI   A   EYYA +A+ L       V +P+ E        EP+GVVG I
Sbjct:    5 PDQLLYIGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAGQ-----RHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQG-----VQVPLREGSFFYTRHEPLGVVGAI 149          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_XANCB (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 3
Query:   66 PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPM-ENFKS*VLKEPIGVVGLI 524
            P + L+I G +          +VNP T E++ ++  A A+D++ AVD+A+        + W++ +   R++ L    A + ER   LA LET++ GKPL E    DI   A   EYYA +A+ L       V +P+ E        EP+GVVG I
Sbjct:    5 PDQLLYIGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAGQ-----RHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQG-----VQVPLREGSFFYTRHEPLGVVGAI 149          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_XANC8 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 3
Query:   66 PSRQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPM-ENFKS*VLKEPIGVVGLI 524
            P + L+I G +          +VNP T E++ ++  A A+D++ AVD+A+        + W++ +   R++ L    A + ER   LA LET++ GKPL E    DI   A   EYYA +A+ L       V +P+ E        EP+GVVG I
Sbjct:    5 PDQLLYIGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAGQ-----RHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQG-----VQVPLREGSFFYTRHEPLGVVGAI 149          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            ++L+I G + E         +NP   E++  +  A+ EDVE AV +A +       K W++ +   R++ LR     + ER  ELA LET+D GKPL E    DI   A   EYYA L   ++ +Q   + L   +F     +EP+GVV
Sbjct:    7 QKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQ-----KVWAAMTAMQRSRILRRAVDLLRERNDELAALETLDTGKPLAETRAVDIVTGADVLEYYAGLVPAIEGEQ---IPLRETSFVY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_YERPY (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            ++L+ING + +         VNP   E +  + AA A+DV+ AV AA+Q         W++ +   R++ LR     + +R  ELA +ET D GKPL E    DI   A   EYYA L   L+ +Q   + L    F     +EP+GVV
Sbjct:    7 QKLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG-----QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQ---IPLRGSAFVY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_YERPS (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            ++L+ING + +         VNP   E +  + AA A+DV+ AV AA+Q         W++ +   R++ LR     + +R  ELA +ET D GKPL E    DI   A   EYYA L   L+ +Q   + L    F     +EP+GVV
Sbjct:    7 QKLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG-----QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQ---IPLRGSAFVY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_YERPP (Betaine aldehyde dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            ++L+ING + +         VNP   E +  + AA A+DV+ AV AA+Q         W++ +   R++ LR     + +R  ELA +ET D GKPL E    DI   A   EYYA L   L+ +Q   + L    F     +EP+GVV
Sbjct:    7 QKLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG-----QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQ---IPLRGSAFVY-TRREPLGVV 146          
BLAST of FC872663 vs. ExPASy Swiss-Prot
Match: BETB_YERPN (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   72 RQLFINGEWREPVLKKRIPIVNPTTEEIVGDIPAATAEDVELAVDAARQALSRNRGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMENFKS*VLKEPIGVV 515
            ++L+ING + +         VNP   E +  + AA A+DV+ AV AA+Q         W++ +   R++ LR     + +R  ELA +ET D GKPL E    DI   A   EYYA L   L+ +Q   + L    F     +EP+GVV
Sbjct:    7 QKLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG-----QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQ---IPLRGSAFVY-TRREPLGVV 146          
The following BLAST results are available for this feature:
BLAST of FC872663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
IOLA_BACHD4.272e-1232.21Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_GEOTN4.272e-1231.45Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_XANCP4.272e-1232.90Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANCB4.272e-1232.90Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANC84.272e-1232.90Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_PSEA74.272e-1233.56Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_YERPY5.579e-1234.23Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPS5.579e-1234.23Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPP5.579e-1234.23Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPN5.579e-1234.23Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872663 ID=FC872663; Name=FC872663; organism=Citrus clementina; type=EST; length=529bp
GGGGAAAAAAAAATAAAAGTAAAAAAACCGAGAGAAAAGGAAAAATGGCG
ATGGCGATCCCAATCCCAAGTCGTCAGCTGTTCATCAACGGTGAATGGAG
AGAGCCCGTTCTCAAGAAACGCATCCCAATCGTTAATCCCACCACTGAAG
AGATCGTCGGTGATATTCCAGCAGCTACCGCTGAAGATGTTGAGCTGGCT
GTGGATGCCGCCCGTCAAGCACTTTCTAGAAACAGAGGGAAGGATTGGTC
CTCTGCATCCGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTA
AGATAACAGAGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGT
GGGAAGCCACTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTG
TTTCGAGTACTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGG
CTCCTGTTTCTCTTCCTATGGAGAATTTCAAGAGTTAAGTACTTAAGGAA
CCCATTGGGGTTGTTGGATTGATTACTCC
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