FC872701

Overview
NameFC872701
Unique NameFC872701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIGAG IP VL+  + D +  VS+E A ET++ +A KEG+LVGISSG      +++AK+PEN GKLIVV+ PS GERYLST LF  +
Sbjct:  223 GIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSALQLAKQPENEGKLIVVLLPSYGERYLSTPLFADL 309          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIGAG IP  LD++++D V TV S+ A+ T++ L  +EG+L GISSG       R+AK PE A KLIVVI PSA ERYLSTALFE I
Sbjct:  228 GIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGI 314          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHE 274
            GIGAG IP  LD++++D+V  VS+EEAI  ++ LA +EGL+ GIS G      +R+A++ E+AGK IVV+ P +GERYLSTALF+ I +E
Sbjct:  234 GIGAGFIPENLDLSLVDQVERVSNEEAIAYARRLAQEEGLISGISCGAAVAAAVRLAQQSEHAGKTIVVVLPDSGERYLSTALFDGIFNE 323          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIG G IP  LD+ ++D+VITVSSEEAI T+K L  KEG+L GISSG      I++ ++ + + K IVVI PS+GERYLST LF  +
Sbjct:  229 GIGPGFIPKNLDLTIIDQVITVSSEEAILTAKELMKKEGILAGISSGAALYAAIKIQQQKKFSDKKIVVILPSSGERYLSTELFSEL 315          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            GIGAG IP  LD++++D +ITVSSEEAI  +K +  KEG+L GISSG      +++ K  +   K IVVI PS+GERYLST LF
Sbjct:  229 GIGAGFIPKNLDLSLIDRIITVSSEEAIFNAKKIMKKEGILSGISSGAAIAAALKIQKENDFKNKNIVVILPSSGERYLSTELF 312          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVE 280
            GIGAG IP  LD+ ++D+VI +++EEAI T++ L  +EG+L GISSG      +++ +      K IVVI PS+GERYLSTALF  +  E E
Sbjct:  229 GIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVE 280
            GIGAG IP  LD+ ++D+VI +++EEAI T++ L  +EG+L GISSG      +++ +      K IVVI PS+GERYLSTALF  +  E E
Sbjct:  229 GIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVE 280
            GIGAG IP  LD+ ++D+V+ +++EEAI T++ L  +EG+L GISSG      +++ +      K IVVI PS+GERYLSTALF  +  E E
Sbjct:  229 GIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVE 280
            GIGAG IP  LD+ ++D+V+ +++EEAI T++ L  +EG+L GISSG      +++ +      K IVVI PS+GERYLSTALF  +  E E
Sbjct:  229 GIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 259
            GI AG IP  LD    D++I V S++A+ET++L   KEG LVGISSG      I VAK+    GK ++ I P  GERYLST L++
Sbjct:  223 GISAGFIPNTLDTKAYDQIIRVKSKDALETARLTGAKEGFLVGISSGAALYAAIEVAKQ-LGKGKHVLTILPDNGERYLSTELYD 306          
The following BLAST results are available for this feature:
BLAST of FC872701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK_NEIMB7.177e-2056.32Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_HAEIN7.935e-1958.62Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
SRPG_SYNE71.036e-1853.33Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_BUCAI8.773e-1855.17Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]
CYSK_BUCAP5.687e-1754.76Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSK_ECOLI8.212e-1648.91Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO578.212e-1648.91Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_SALTY1.072e-1547.83Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI1.072e-1547.83Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_STRP65.885e-1449.41Cysteine synthase OS=Streptococcus pyogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872701 ID=FC872701; Name=FC872701; organism=Citrus clementina; type=EST; length=680bp
GGGGGGTATTGGTGCTGGTGTCATCCCTCCTGTTTTGGACGTTGCCATGC
TCGATGAAGTTATTACAGTATCAAGTGAGGAAGCTATTGAAACTAGTAAG
CTGCTTGCCCTGAAGGAAGGTTTGCTGGTTGGAATATCTTCTGGTGCAGC
AGCGGCAGCTGCTATACGAGTAGCAAAGAGGCCTGAAAATGCAGGGAAAC
TCATTGTTGTGATTTTCCCCAGTGCTGGAGAGCGTTATCTATCCACAGCA
TTGTTCGAATCCATTAGACACGAAGTGGAAAATATGCCCATTGATTAAGA
CGTCACCAAGTTTAGTAAGCAGCTGCCTGAATTTGGGACAAACATCCCTG
CATTTTCCGTATGTGCCAGCTTATATTTACTTACTCTTTATCGACTGTAT
TTTAGTTCTTCTGATGCTGTGACGGCTAGATTCTAGAGAATGGAACTAAG
CCTTCAGCACAAGAAGATTCAATAAATTTTGTATGTAAAATTGCAATTTA
GACAACCAATCTGCTAAGAAAGCAATGCATTGTAAAATAATCTCAAATTT
GCTTCCCTTTGCTAGCAAGGTTTGGACAAGTTTGACAGATAGTTGTTTGT
TGTTATTTGCAAGCAACTTAAATTCTGCAATGAAATTAAACTTTAAACGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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