FC872775

Overview
NameFC872775
Unique NameFC872775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.011e-50
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.011e-50
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.011e-50
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.011e-50
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.011e-50
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.011e-50
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.320e-50
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N  S  +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P S
Sbjct:   10 NGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQS 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.118e-49
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N     +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P +
Sbjct:   10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.118e-49
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N     +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P +
Sbjct:   10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188
[Close]
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.118e-49
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 3 
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            N     +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P +
Sbjct:   10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188
The following BLAST results are available for this feature:
BLAST of FC872775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_PIG1.011e-5056.11Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.011e-5056.11Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.011e-5056.11Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.011e-5056.11Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.011e-5056.11Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.011e-5056.11Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB5B_CHICK1.320e-5056.67Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB5B_PONAB1.118e-4955.56Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE1.118e-4955.56Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN1.118e-4955.56Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872775 ID=FC872775; Name=FC872775; organism=Citrus clementina; type=EST; length=933bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTTGCAC
TGCATTATGATTTATGAATCTCACTGGAAAACT
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