FC872775

Overview
NameFC872775
Unique NameFC872775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1056 contig Ccv1_Contig1056:1..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.860e-45
Identity = 92/175 (52.57%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  234 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            N    +   +  KLVLLGDS VGKS +VLRFV+ QFD   + T+GA+FL+QT+ + ++T+VK EIWDTAGQERY +LAP+YYR        YDIT   S  KA+ W+KELQ+     IV+AL GNK DL  E+R V   D   YA +  + F ETSAKTA+N+N+LF  IAK+LP
Sbjct:    4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 5.940e-43
Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +K+ LLGD+GVGKS IV RFV   FDP    T+GASF+++T+  Q+    KF IWDTAGQER+ ALAP+YYRG       YDIT  ++F+  + WVKEL++HG P+IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.323e-42
Identity = 86/163 (52.76%), Postives = 115/163 (70.55%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +K+ LLGD+GVGKS IV RFV   FDP    T+GASF+++T+  Q+    KF IWDTAGQER+ ALAP+YYRG       YDIT  ++F+  + WV+EL++HG P IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.728e-42
Identity = 85/166 (51.20%), Postives = 119/166 (71.69%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +KLVLLG++ VGKS IVLRFV   F    + T+GA+FL+Q + + + T VKFEIWDTAGQER+A+LAP+YYR        YD+T P SF KA++WVKEL +  S DI++ALVGNK D+ +   +R+V  ++G + AE+ G+ F ETSAKT +N+N +F  I +++P
Sbjct:    8 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.948e-42
Identity = 86/163 (52.76%), Postives = 115/163 (70.55%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +K+ LLGD+GVGKS IV RFV   FDP    T+GASF+++T+  Q+    KF IWDTAGQE + ALAP+YYRG       YDIT  ++F+  + WVKEL++HG P+IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 5.029e-42
Identity = 87/167 (52.10%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 767
            +K+ LLGD+GVGKS IV RFV+  FD     T+GASF+++T+   +    KF IWDTAGQER+ +LAP+YYRG       YDIT  DSF+  + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P   P
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDP 171          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.029e-42
Identity = 87/167 (52.10%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 767
            +K+ LLGD+GVGKS IV RFV+  FD     T+GASF+++T+   +    KF IWDTAGQER+ +LAP+YYRG       YDIT  DSF+  + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P   P
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGP 171          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.120e-41
Identity = 87/167 (52.10%), Postives = 114/167 (68.26%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 767
            +K+ LLGD+GVGKS IV RFV+  FD     T+GASF+++T+   +    KF IWDTAGQER+ +LAP+YYRG       YDIT  DSF   + WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P   P
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 171          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB5B_DICDI (Putative ras-related protein Rab-5B OS=Dictyostelium discoideum GN=rab5B PE=5 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.871e-37
Identity = 87/202 (43.07%), Postives = 121/202 (59.90%), Query Frame = 3
Query:  159 TGRMGCSGSVPARSSGQSGGLNNLENAGSSDAKNL---RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY-AEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            T + GC G   ++ +  +     + +  S+D +N      KLVLLG+   GK+CI  R VR +F PT   T+GA+FL +++ + D+  +K EIWDTAGQERY +L P+YYRG       YDIT  ++F   + WV ELQKH SP++++AL GNK DL   REV   +   Y +E     F ETSA +  NIN+LF EI +RL
Sbjct:   11 TAKGGCCGGGGSQDNKANQNSGIVVSNTSTDNRNKFDKGFKLVLLGEMNTGKTCISSRLVRNEFGPTDS-TIGAAFLVKSMVV-DNINIKLEIWDTAGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDL-PNREVQVDEVNRYISELGNAIFFETSAASGQNINELFTEICRRL 209          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.308e-37
Identity = 81/177 (45.76%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  261 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL------HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 773
            L +K+VLLG+S VGKS IVLRFV   F  + + T+GA+FL++ I  +D   +KFEIWDTAGQER+A LAP+YYR        +D+T+  SF KAQ WV+EL +    DIV+ALVGNK DL      +E R + A       E+  + + E SAKT +NI Q+F+ + +++P P  ++
Sbjct:   11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRIT-RDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKVPCPEQNT 186          
The following BLAST results are available for this feature:
BLAST of FC872775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT5_SCHPO4.860e-4552.57GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
RB22A_HUMAN5.940e-4353.37Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RB22A_MOUSE1.323e-4252.76Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
VPS21_YEAST1.728e-4251.20Vacuolar protein sorting-associated protein 21 OS=... [more]
RB22A_CANFA2.948e-4252.76Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RAB31_RAT5.029e-4252.10Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE5.029e-4252.10Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB31_HUMAN1.120e-4152.10Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB5B_DICDI4.871e-3743.07Putative ras-related protein Rab-5B OS=Dictyosteli... [more]
YPT53_YEAST8.308e-3745.76GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872775 ID=FC872775; Name=FC872775; organism=Citrus clementina; type=EST; length=933bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTTGCAC
TGCATTATGATTTATGAATCTCACTGGAAAACT
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