FC872775

Overview
NameFC872775
Unique NameFC872775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1056 contig Ccv1_Contig1056:1..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.859e-34
Identity = 73/175 (41.71%), Postives = 110/175 (62.86%), Query Frame = 3
Query:  234 NAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +AG      LR  KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR++  ++G + A++  + FIETSAKT  N+ QLF  +A  LP
Sbjct:    2 SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.859e-34
Identity = 73/175 (41.71%), Postives = 110/175 (62.86%), Query Frame = 3
Query:  234 NAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 755
            +AG      LR  KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR++  ++G + A++  + FIETSAKT  N+ QLF  +A  LP
Sbjct:    2 SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.041e-34
Identity = 73/161 (45.34%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  267 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            +KL+L+GDSGVGKSC++LRF  G F  +   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YD+T   SFN  + W++ +++H S ++   LVGNKAD+ E KR VP   G   A++ G+ F ETSAKT  N+ ++F  IA+
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.041e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 5.041e-34
Identity = 63/161 (39.13%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D+  +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+K+ + + + ++ + L+GNK+D+  KR V  ++G ++A++NG+ F+ETSAKTA N+ + F   A ++
Sbjct:    7 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKI 166          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.041e-34
Identity = 70/170 (41.18%), Postives = 104/170 (61.18%), Query Frame = 3
Query:  243 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            + D  +   K+VL+GDSGVGKS ++ RF + +F   SK T+G  F ++++ + D   +K +IWDTAGQERY A+   YYRG       YD+T   +F   + W+KEL+ H  P+IV+ LVGNK+DL     V  +D   +AEK  ++F+ETSA  A N+   F E+  ++
Sbjct:    6 ADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKV-IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQI 174          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.583e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEI 167          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.583e-34
Identity = 70/171 (40.94%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  240 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            G+ +  N   K+VL+G+SGVGK+ ++ RF R +F   S+ T+G  F ++T+ L  +  VK +IWDTAG ERY A+   YYRG       +D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:    4 GTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.598e-34
Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  240 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            G  +  N   K+VL+G+SGVGK+ ++ RF R +F   S+ T+G  F ++T+ L  +  VK +IWDTAG ERY A+   YYRG       +D+T   ++   + W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:    4 GKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLL-GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
BLAST of FC872775 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 8.598e-34
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 740
            K+VL+GDSGVGKS I+ RF R +F   SK T+G  F ++T  ++  T +K +IWDTAGQERY A+   YYRG       YDIT   +F+    W++EL+ H   +IV+ + GNK+DL+  R V  +DG   AEK G+ F+ETSA  A N+ + F+ I
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKT-IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTI 169          
The following BLAST results are available for this feature:
BLAST of FC872775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6B_HUMAN3.859e-3441.71Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN3.859e-3441.71Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RB1BV_BETVU5.041e-3445.34Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB2A_RAT5.041e-3440.37Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_DICDI5.041e-3439.13Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAA1C_ARATH5.041e-3441.18Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAB2_LYMST6.583e-3440.37Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB25_HUMAN6.583e-3440.94Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT8.598e-3440.94Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAA2C_ARATH8.598e-3445.86Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872775 ID=FC872775; Name=FC872775; organism=Citrus clementina; type=EST; length=933bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTTGCAC
TGCATTATGATTTATGAATCTCACTGGAAAACT
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