FC872776

Overview
NameFC872776
Unique NameFC872776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  333 LKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  333 LKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.942e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 188
            +KGC  GP+KR +TLR+S+  Q  R ALE+I LKFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  332 LKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 194
            ++G  +GPKKR++TLR+SL+ Q  R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  330 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 194
            ++G  +GPKKR++TLR+SL+ Q  R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  330 LRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 5.548e-14
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            VKGC  G +KR+VTLR+SL    SR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  324 VKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 188
            VKG  VG +KRVVTLR+SLL+Q    A EE+ +KF+DTSSK GHGRFQT+ EK  +YG  KA
Sbjct:  318 VKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            VKG   G KKRV+TLR++L  Q SR A E+++LK+IDTSSKFGHG FQT +EK  + G LK
Sbjct:  325 VKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            VKG   G +KRVVTLR+SL    SR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  325 VKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            VKG   G KKRV+TLR+S+    SR ALE+++LK+IDTSS+FGHG FQT  EK ++ G LK
Sbjct:  325 VKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
The following BLAST results are available for this feature:
BLAST of FC872776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3L_BOVIN4.538e-1667.2160S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3L_HUMAN1.011e-1565.5760S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_DICDI2.942e-1559.6860S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_CAEEL5.018e-1559.3860S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR5.018e-1559.3860S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_YEAST5.548e-1462.3060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ENCCU1.236e-1362.9060S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_ASPFU2.108e-1360.6660S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_ASHGO4.696e-1362.3060S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_NEUCR6.134e-1359.0260S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872776 ID=FC872776; Name=FC872776; organism=Citrus clementina; type=EST; length=413bp
GGGTCAAGGGCTGCTGTGTTGGACCTAAGAAGCGTGTTGTGACGTTGAGG
CAGTCCCTACTGAAGCAGATGTCTAGGCTTGCATTGGAGGAGATTAAGCT
CAAGTTCATTGACACATCCTCCAAGTTCGGCCATGGTCGGTTCCAGACAA
CGCAGGAGAAGGCCAAGTACTATGGAAGGCTCAAGGCTTGATTTTGGCCA
AGTTGAAGAAGAGATTGCCTTTGGTTTCAGGGTAGTTTTGAACATCTAAG
ATTTTTGGTCATTCTAGTCTCTATTTTGAATTAATTAATATGGCTTTGGC
TACACTGGCAGTGCTTTGAAACTCCATTTGTGCATGGTTTCTTTTTTGCG
CGTTAATACATCTTACGGTATTTTTGGGCTTTAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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