FC872778

Overview
NameFC872778
Unique NameFC872778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.850e-81
Identity = 149/249 (59.84%), Postives = 187/249 (75.10%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            FLFTSESV+EGHPDK+CDQISDAVLDA L QDP +KVACET TKT M+M+ GEIT+KA VDY+ +VR+  + IG+     G D   C VLV +EQQSP+IA GVH  + K   D+GAGDQG MFGYATDET E MPL+ +L+ KL  +L E+R++    W+RPD KTQVT+EY ++ GA VP+RVHTV+ISTQH   ++ +++  +L E VIK VIP   +D  T++HLNP G FV+GGP GDAGLTGR
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVH--VDKDIADVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVRPDSKTQVTIEYSSEGGACVPLRVHTVVISTQHSPDISLEDLRKELIEKVIKVVIPGNLIDNDTVYHLNPCGSFVVGGPMGDAGLTGR 252          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_DROME (S-adenosylmethionine synthetase OS=Drosophila melanogaster GN=M(2)21AB PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 3.722e-81
Identity = 146/250 (58.40%), Postives = 187/250 (74.80%), Query Frame = 1
Query:  109 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            TFLFTSESV EGHPDK+CDQISDA+LDA L+QDP +KVACET  KT M+++ GEIT+KA VDY+K+VR+T + IG+     G D   C VL+ ++QQSP+IA GVH  + +  E+IGAGDQG MFGYATDET E MPL+ VLA KL  ++ E+R++    W RPD KTQVT EY  + G+ VP RVHT+++S QH E ++ + + +++ E V+K VIP KY+D  TI H+NP G FVIGGP GDAGLTGR
Sbjct:   28 TFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVH--VNRAEEEIGAGDQGIMFGYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGR 275          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.729e-78
Identity = 152/256 (59.38%), Postives = 182/256 (71.09%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISDA+LDA LE+DP ++VACET   T +V+V GEITT   VD  +IVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MPL   LA +L  RL EVRK     +LRPDGKTQVT+E Y++NG   PVRV T++ISTQH   + +D+I  D+KEHVIKP++P + LDE T + +NP+GRFVIGGP GDAGLTGR
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKFGFDADTCAVLTAIDEQSPDIAMGVDQALEAREGQMTDEEIEAIGAGDQGLMFGFACNETEELMPLPISLAHRLSRRLAEVRKTDVLPYLRPDGKTQVTIE-YDENGK--PVRVDTIVISTQHHPEIEHDQIERDMKEHVIKPIVPAELLDENTKYFINPTGRFVIGGPQGDAGLTGR 259          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.729e-78
Identity = 150/256 (58.59%), Postives = 184/256 (71.88%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISDA+LDA LE+DP ++VACET   T +V+V GEITT   VD  KIVRDT R IG+     G DAD C VL +I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MPL   LA +L  RL+EVRK +   +LRPDGKTQVTVE Y++NG   PVR+ T+++S QH   +T ++I  D+KEHVIKP++P + +DE T + +NP+GRFVIGGP GDAGLTGR
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDKALEAREGQMTDEEIEAIGAGDQGLMFGFACNETKELMPLPISLAHRLARRLSEVRKEAILPYLRPDGKTQVTVE-YDENGK--PVRIDTIVVSAQHHPEITQEQIERDIKEHVIKPIVPAELIDENTKYFINPTGRFVIGGPQGDAGLTGR 259          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_CLOTE (S-adenosylmethionine synthetase OS=Clostridium tetani GN=metK PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.031e-78
Identity = 151/254 (59.45%), Postives = 185/254 (72.83%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR-----PED-IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISDAVLDA LE+DP  +VACET   T MV+V GEITT   VD  KIVR+T  +IG+     G D+D C VL +I +QSPDIA GV   L  +      ED IGAGDQG MFGYA +ETSE+MP++  +A KL  RL+EVRKN T  +LRPDGKTQVTVE Y DN A   +R+ T+++STQH   VT ++I  D+ EHVI  V+P ++LDE T +++NP+GRFV+GGP GDAGLTGR
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILERDPNGRVACETSVTTGMVLVTGEITTNCYVDIPKIVRNTIEAIGYTRAKYGFDSDTCAVLTSISEQSPDIAMGVDESLESKQGGMDKEDVIGAGDQGMMFGYANNETSEYMPMAISIAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVE-YEDNKA---IRIDTIVVSTQHGPEVTREQIEKDIFEHVISKVVPVEFLDENTNYYINPTGRFVVGGPQGDAGLTGR 253          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.031e-78
Identity = 146/254 (57.48%), Postives = 182/254 (71.65%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISDA+LDA L+ DP  +VACET   T MVMV GEI+T   VD  K+VR+    IG+     G DA+ C VL +I++QS DIA GV   L  R       E IGAGDQG MFG+AT+ET E+MPL   +A KL  +L EVRKN T ++LRPDGKTQVTVEY ++     PVR+  V++STQHD  VT ++I  D+ EHVIK V+P ++LD++T +++NP+GRFVIGGPHGD GLTGR
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILKNDPNGRVACETAVTTGMVMVMGEISTNCYVDIPKVVREVISDIGYTRAKYGFDAETCSVLTSIDEQSQDIAMGVDEALESRQGQKDDVEAIGAGDQGIMFGFATNETKEYMPLPINMAHKLSRKLAEVRKNGTLAYLRPDGKTQVTVEYEDNK----PVRIDAVVVSTQHDPEVTQEQIQKDIMEHVIKTVVPNEWLDDETKYYINPTGRFVIGGPHGDTGLTGR 253          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_BACP2 (S-adenosylmethionine synthetase OS=Bacillus pumilus (strain SAFR-032) GN=metK PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.121e-77
Identity = 151/256 (58.98%), Postives = 186/256 (72.66%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-------HGHLTKRPED-IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISD++LD  L++DP ++VACET   T +V+V GEITT   VD  K VRDT + IG+     G DA+ C VL +I++QS DIAQGV        G +T+   D IGAGDQG MFG+A +ET E MPL   LA KL  RLTEVRK+ T ++LRPDGKTQVTVEY + N    PVR+ TV+ISTQH   VT ++I +DLKEHVI PV+P + +DE+T + +NP+GRFVIGGP GDAGLTGR
Sbjct:    7 LFTSESVTEGHPDKICDQISDSILDEILKKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRDTIKEIGYTRAKYGFDAETCAVLTSIDEQSADIAQGVDKALEAREGTMTEEELDAIGAGDQGLMFGFANNETEELMPLPISLAHKLSLRLTEVRKDQTLAYLRPDGKTQVTVEYDDQN---KPVRIDTVVISTQHAPEVTLEQIQSDLKEHVISPVVPSELIDEQTKYFINPTGRFVIGGPQGDAGLTGR 259          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.464e-77
Identity = 148/254 (58.27%), Postives = 179/254 (70.47%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISDAVLDA   +DP ++VACET   T +VMV GEITT   VD  KI R+T ++IG+     G D + C V+  I++QS DIA GV   L  R       + +GAGDQG MFG+AT+ET EFMP    +A +L  RLTEVRKN T  +LRPDGKTQVTVEY ND     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T +++NP+GRFVIGGP GDAGLTGR
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGR 253          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.464e-77
Identity = 148/254 (58.27%), Postives = 179/254 (70.47%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+CDQISDAVLDA   +DP ++VACET   T +VMV GEITT   VD  KI R+T ++IG+     G D + C V+  I++QS DIA GV   L  R       + +GAGDQG MFG+AT+ET EFMP    +A +L  RLTEVRKN T  +LRPDGKTQVTVEY ND     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T +++NP+GRFVIGGP GDAGLTGR
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGR 253          
BLAST of FC872778 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.497e-77
Identity = 150/256 (58.59%), Postives = 180/256 (70.31%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 858
            LFTSESV EGHPDK+ DQISDAVLDA L QDP+++VACET   T +V+V GEITT   VD  K+VR+T R IG+     G D D C V+ +I++QSPDIA GV+  L  +         E IGAGDQG MFGYAT+ET E MP+   LA +L  RL EVRK+    +LRPDGKTQVTVEY  D     PVRV T+++STQH   V+ +EI  D+ EHV+KPVIPE  LDE T + +NP+GRFVIGGP GDAGLTGR
Sbjct:    5 LFTSESVTEGHPDKIADQISDAVLDAILAQDPQARVACETAVTTGLVLVIGEITTSCYVDIPKVVRETIREIGYTRAKYGFDGDTCAVITSIDEQSPDIALGVNRALEAKTGEMTDDEIEAIGAGDQGMMFGYATNETPELMPMPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEYDGDK----PVRVDTIVVSTQHHPDVSQEEIRKDIIEHVVKPVIPEHLLDENTRYFVNPTGRFVIGGPQGDAGLTGR 256          
The following BLAST results are available for this feature:
BLAST of FC872778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK5_CAEEL2.850e-8159.84Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK_DROME3.722e-8158.40S-adenosylmethionine synthetase OS=Drosophila mela... [more]
METK_GEOTN1.729e-7859.38S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_GEOSW1.729e-7858.59S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_CLOTE5.031e-7859.45S-adenosylmethionine synthetase OS=Clostridium tet... [more]
METK_CLONN5.031e-7857.48S-adenosylmethionine synthetase OS=Clostridium nov... [more]
METK_BACP21.121e-7758.98S-adenosylmethionine synthetase OS=Bacillus pumilu... [more]
METK_CLOPS1.464e-7758.27S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP11.464e-7758.27S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CARHZ2.497e-7758.59S-adenosylmethionine synthetase OS=Carboxydothermu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872778 ID=FC872778; Name=FC872778; organism=Citrus clementina; type=EST; length=858bp
GGGGGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTA
AGTCTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATA
AGATGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCGGATATTGCCCAGGGTGTTCATGGCCACCTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTG
CTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCC
GATGGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCAT
GGTTCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGA
CTGTCACAAATGATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAG
CCTGTCATCCCCGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAA
TCCATCAGGTCGTTTTGTCATTGGTGGGCCTCATGGTGATGCTGGTCTCA
CTGGACGT
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