FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METEP (50S ribosomal protein L3 OS=Methylobacterium extorquens (strain PA1) GN=rplC PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.211e-43 Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL +D V +T EK+G+ +LQVG G+ K K++++ E G F V K+KL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVVAHRTTEKDGYVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 49.6766 bits (117), Expect = 4.211e-43 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG +G ++ T +N+ V + DP R L+ V G VPG +G ++ ++D+V +K Sbjct: 160 KKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVRDSVKRK 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METC4 (50S ribosomal protein L3 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplC PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.211e-43 Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL +D V +T EK+G+ +LQVG G+ K K++++ E G F V K+KL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVVAHRTTEKDGYVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 49.6766 bits (117), Expect = 4.211e-43 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG +G ++ T +N+ V + DP R L+ V G VPG +G ++ ++D+V +K Sbjct: 160 KKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVRDSVKRK 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ACICJ (50S ribosomal protein L3 OS=Acidiphilium cryptum (strain JF-5) GN=rplC PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 9.330e-43 Identity = 74/163 (45.40%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G +PV+VL +DD V +T E++G+ ++Q+G G K K++TKP GHF A V +L EF V +DA+L G L HF GQ VD+ RW F+G+ ASHG S+SHRSLGSTG R PGK FK KK G Sbjct: 5 RTGIIAKKLGMTRLFREDGTHVPVTVLHMDDVRVVAARTKERDGYAAVQLGFGHAKTKNVTKPMKGHFAAAKVEPANRLVEFRVADDAVLEAGQVLSAAHFTVGQKVDVAGISKGKGFAGGMKRWNFRGLEASHGVSISHRSLGSTGNRQDPGKTFKNKKMAG 167 HSP 2 Score: 51.2174 bits (121), Expect = 9.330e-43 Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KM G +GG++ T N+ V ID ARNL+ ++G VPGA +V ++DAV Sbjct: 163 KKMAGHLGGERITTLNLEVAAIDEARNLIMIKGAVPGAKDGYVLVRDAV 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_CAUSK (50S ribosomal protein L3 OS=Caulobacter sp. (strain K31) GN=rplC PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.061e-42 Identity = 74/169 (43.79%), Postives = 98/169 (57.99%), Query Frame = 1 Query: 202 MTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 MT + RTG+IA K G+T +D+ G +PV+VL +D V+ +T EK+G+ +LQ+G G KK K+ GHF V KR + EF V E AL+ +G H++ GQ VDI RW F G+ A+HG S+SHRS GSTGQR PG+ FKGKK G Sbjct: 1 MTLPANRTGVIAKKLGMTRFFDETGQHVPVTVLSLDGCQVTAQRTVEKDGYTALQLGAGAKKPKNTPNAMRGHFAKNSVEPKRIVAEFRVDEAALIEVGAEFTADHYVAGQKVDIQGITVGKGFAGAMKRWNFSGLRATHGVSVSHRSHGSTGQRQDPGRTFKGKKMAG 169 HSP 2 Score: 52.373 bits (124), Expect = 2.061e-42 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYF 884 G+KM G +G + T NV V+K+D R L+ V+G VPG+ G++V ++DA+ KK LP P F Sbjct: 164 GKKMAGHLGQETVTTLNVTVWKVDVERGLILVKGAVPGSEGSYVKVRDAI-KKAAPADLPRPGAF 227
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_CAUCR (50S ribosomal protein L3 OS=Caulobacter crescentus GN=rplC PE=3 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 2.686e-42 Identity = 75/169 (44.38%), Postives = 101/169 (59.76%), Query Frame = 1 Query: 202 MTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 MT ++RTG+IA K G+T +D+ G +PV+VL +D V+ V+T EK+G+ +LQ+G G KK K+ + GHF V KR + EF V E+AL+ +G L HF+ GQ VDI RW F G+ A+HG S+SHRS GSTG R PG+ F GKK G Sbjct: 1 MTLPTQRTGVIAKKLGMTRFFDEAGQHVPVTVLSLDGCQVTGVRTVEKDGYTALQLGAGAKKAKNTSNAMRGHFAKAAVEPKRVVAEFRVEENALIEVGAELTADHFVAGQKVDIQGVTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFPGKKMAG 169 HSP 2 Score: 50.8322 bits (120), Expect = 2.686e-42 Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G+KM G +G + T NV V+K+D R L+ V+G VPG G++V ++DAV K Sbjct: 164 GKKMAGHLGQETVTTLNVTVWKVDVERGLILVKGAVPGHEGSYVKVRDAVKK 215
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_GLUDA (50S ribosomal protein L3 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplC PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.011e-41 Identity = 74/163 (45.40%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTGLIA K G+T + + G +PV+VL VD+ V V+T +++G+ ++Q+G G K K+++KP GHF V K+KL EF V +DA+L G +L HF+ GQ VD+ RW F G+ ASHG S+SHRS GSTG R PGK FK KK G Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHVDNLQVVDVRTQDRDGYTAVQLGFGNAKVKNVSKPNRGHFARVKVEPKKKLAEFRVADDAVLEAGATLSAAHFVVGQKVDVTSTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAG 164 HSP 2 Score: 46.595 bits (109), Expect = 1.011e-41 Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFP 875 +KM G +G ++ T N+ V +D +NL+ VRG VPG V ++DA+ KK P+P Sbjct: 160 KKMAGHLGSERVTTLNLEVAAVDAEKNLLMVRGSVPGGKNELVLVRDAI-KKARHAEAPYP 219
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_MARMM (50S ribosomal protein L3 OS=Maricaulis maris (strain MCS10) GN=rplC PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.314e-41 Identity = 75/169 (44.38%), Postives = 101/169 (59.76%), Query Frame = 1 Query: 202 MTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 M +RTG++A K G+T + + G+ +P +VL +D+ V KT +++G+ +LQ+G G+ K K K GHF V KRKL EF V EDAL+ +G+ L HF+PGQ VD+ R GF G+ A+HG S+SHRS GSTGQ PGKVFKGKK G Sbjct: 1 MRQEDRRTGVVARKLGMTRIFAEDGSHVPCTVLHMDNVQVVSHKTADRDGYVALQLGAGEAKAKRTPKAMRGHFAKAKVAPKRKLVEFRVAEDALIEVGSELTADHFVPGQKVDVAGISIGKGFAGAMKRHGFGGLRATHGVSISHRSHGSTGQCQDPGKVFKGKKMAG 169 HSP 2 Score: 48.521 bits (114), Expect = 1.314e-41 Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYF 884 G+KM G MG + T +N+ V ++D R ++ V+G VPG++G +V ++DA+ K LP P F Sbjct: 164 GKKMAGHMGAVRVTTQNIEVVRVDVERGIVLVKGAVPGSAGGWVELRDAI-KGHGGTELPLPGKF 227
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_NITWN (50S ribosomal protein L3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.437e-41 Identity = 71/163 (43.56%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F V KRK+ EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGHRTSEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 49.6766 bits (117), Expect = 6.437e-41 Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYF 884 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV KKP K P P F Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVRDAV-KKPLPKEAPKPGKF 222
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_PHEZH (50S ribosomal protein L3 OS=Phenylobacterium zucineum (strain HLK1) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 8.380e-41 Identity = 73/165 (44.24%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEW 714 RTG+IA K G+ +D+ G +PV+VL ++ V +T +K+G+ +LQ+G G KK K+ +K GHF V K KL EF V+ED L+ +G L HF+PGQ VDI RW F G+ A+HG S+SHRS GSTGQR PG+ F GKK G + Sbjct: 2 RTGVIAKKLGMARFFDEAGVHVPVTVLSLEGCQVVAHRTKDKDGYVALQLGAGSKKPKNTSKGLRGHFAKGQVEPKAKLVEFKVSEDNLIDVGAELTADHFVPGQKVDITGTTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGQRQDPGRTFPGKKMAGHY 166 HSP 2 Score: 48.521 bits (114), Expect = 8.380e-41 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G G + T N+ V+++D R L+ V+G VPG G FV I+DAV Sbjct: 159 GKKMAGHYGQETVTTLNLTVWRVDAERGLILVKGAVPGTEGTFVKIRDAV 208
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RHOPT (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplC PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 8.390e-41 Identity = 75/163 (46.01%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQVG G +K +M K E G F A V KRK+ EF V+EDALLP+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVLGHRTKEKNGYVALQVGSGSRKTVYMPKAERGQFAAAKVEPKRKVEEFRVSEDALLPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.0542 bits (105), Expect = 8.390e-41 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 +KMPG MG + T N+ V + D R L+ V G VPG G ++ ++DAV K Sbjct: 160 KKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGTKGGWIRVRDAVKK 210 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |