FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RHOPA (50S ribosomal protein L3 OS=Rhodopseudomonas palustris GN=rplC PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 8.390e-41 Identity = 75/163 (46.01%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQVG G +K +M K E G F A V KRK+ EF V+EDALLP+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVLGHRTKEKNGYVALQVGSGSRKTVYMPKAERGQFAAAKVEPKRKVEEFRVSEDALLPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.0542 bits (105), Expect = 8.390e-41 Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 +KMPG MG + T N+ V + D R L+ V G VPG G ++ ++DAV K Sbjct: 160 KKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGTKGGWIRVRDAVKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RHOP2 (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplC PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.856e-40 Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLAHRTTEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 46.9802 bits (110), Expect = 1.856e-40 Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 +KMPG MG + T N+ V ++D R L+ V G VPG+ G ++ ++DAV K Sbjct: 160 KKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWISVRDAVKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_PARDP (50S ribosomal protein L3 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplC PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.417e-40 Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G ++PV+VL VD+ V +T E++G+ +LQ+G G+ K K T GHF V KRK+ EF V+ + L+ +G + H+ GQYVDI R F G+ ASHG S+SHRS GSTGQ PGKVFKGKK G Sbjct: 3 RTGVIAKKLGMTRLFLEDGRQVPVTVLHVDNVQVIAQRTAEQDGYVALQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAG 165 HSP 2 Score: 54.299 bits (129), Expect = 2.417e-40 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFP 875 G+KM G +G + T +N+ V K D R L+ V+G VPG+ G +V IKDAV KKP + FP Sbjct: 160 GKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIKDAV-KKPLAESTVFP 220
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RHOP5 (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.418e-40 Identity = 72/163 (44.17%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F A V KRK+ EF V+ED+++PIG + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTSEKNGYTALQLGSGSRKTVYMPKAERGQFAAAKVEPKRKVAEFRVSEDSMIPIGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 46.9802 bits (110), Expect = 2.418e-40 Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 +KMPG MG + T N+ V ++D R L+ V G VPG+ G ++ ++DAV K Sbjct: 160 KKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWIAVRDAVKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_SPHAL (50S ribosomal protein L3 OS=Sphingopyxis alaskensis GN=rplC PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 3.147e-40 Identity = 70/163 (42.94%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + G +PV+VL ++ V V+ E++G+ ++Q+G G K K++ KP+ G + V K KL EF V +DA L +G L HF+ GQ VDI RWGF GM A+HG S+SHR+ GSTG R PG+VFK KK G Sbjct: 2 RTGVIAKKMGMTRLFQDDGRHVPVTVLSLEGCQVVSVRDKERDGYVAVQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMVDIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAG 164 HSP 2 Score: 51.9878 bits (123), Expect = 3.147e-40 Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFP 875 +KM G MG + RT +N+ + + D R L++V+G VPG+ G ++ ++DAV K P P+P Sbjct: 160 KKMAGHMGARNRTQQNLEIVRTDAERGLLFVKGSVPGSKGGWLLVRDAV-KLPRHPEAPYP 219
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_NITHX (50S ribosomal protein L3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplC PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.105e-40 Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G IPV+VL + + V +T EK G+ +LQ+G G +K ++ K E G F V KRK+ EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHIPVTVLRLSNCQVLGHRTSEKNGYVALQLGSGARKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 49.2914 bits (116), Expect = 4.105e-40 Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYF 884 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV KKP K P P F Sbjct: 160 KKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVRDAV-KKPLPKDAPKPGKF 222
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RHOPB (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplC PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 5.348e-40 Identity = 70/163 (42.94%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ ++Q+G G +K ++ K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVAMQLGSGTRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 47.7506 bits (112), Expect = 5.348e-40 Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 +KMPG MG + T N+ V + D AR L+ V G VPG+ G ++ ++DAV K Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVARGLILVEGAVPGSKGGWIAVRDAVKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RHOPS (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 5.349e-40 Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVAHRTTEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.8246 bits (107), Expect = 5.349e-40 Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV K Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVRDAVKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RICAH (50S ribosomal protein L3 OS=Rickettsia akari (strain Hartford) GN=rplC PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 5.358e-40 Identity = 73/163 (44.79%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RIP++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E + I +L V HF+ GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIPLTLVKVDDCQVVGHKTLEKHGYNALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 51.6026 bits (122), Expect = 5.358e-40 Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G+KM G MG Q T++N+ ++ +D R L+ +RG +PG +++ IKDAV K Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDRERKLIMIRGSIPGHKNSYLSIKDAVKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_XANP2 (50S ribosomal protein L3 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.969e-40 Identity = 70/163 (42.94%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL V+ V +T +K G+ ++Q+G G++K K++T+ E GHF V K KL EF V E+AL+P+G + HF+ GQYVD+ R F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRIFTDAGEHVPVTVLKVESCQVVAHRTLDKNGYVAVQLGAGRRKPKNVTRAERGHFAVAQVEPKHKLAEFRVPEEALIPVGAEITADHFVVGQYVDVTGTTIGKGFAGGMKRHNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 46.595 bits (109), Expect = 6.969e-40 Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG MG T +N+ V D R L+ V G VPG +G ++ ++DAV KK Sbjct: 160 KKMPGHMGDVTVTTQNLKVVMTDVERGLIAVEGAVPGHAGGWITVRDAVKKK 211 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |