FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RICPU (50S ribosomal protein L3 OS=Rickettsia peacockii (strain Rustic) GN=rplC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.552e-39 Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 49.6766 bits (117), Expect = 7.552e-39 Identity = 19/52 (36.54%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ +KDA+ K Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_PROMH (50S ribosomal protein L3 OS=Proteus mirabilis (strain HI4320) GN=rplC PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.671e-38 Identity = 67/162 (41.36%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ +++N V+QVK EK+G+ ++QV G KK + KPE GHF GV R LREF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PG+VFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEIENNRVTQVKDLEKDGYRAIQVTTGSKKANRVLKPEAGHFAKAGVEAGRLLREFRLNEGEEYTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGRVFKGKKMAGQ 164 HSP 2 Score: 51.9878 bits (123), Expect = 1.671e-38 Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G +Q TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 158 GKKMAGQLGNEQVTVQSLEVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RICCN (50S ribosomal protein L3 OS=Rickettsia conorii GN=rplC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.176e-38 Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 48.1358 bits (113), Expect = 2.176e-38 Identity = 18/52 (34.62%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G+KM G MG + T++N+ ++ +D R L+ ++G +PG +++ +KDA+ K Sbjct: 159 GKKMAGHMGCNKVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RICFE (50S ribosomal protein L3 OS=Rickettsia felis GN=rplC PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.835e-38 Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + I SL V +F GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAASLEVDYFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 49.6766 bits (117), Expect = 2.835e-38 Identity = 19/52 (36.54%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ +KDA+ K Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_PHOLL (50S ribosomal protein L3 OS=Photorhabdus luminescens subsp. laumondii GN=rplC PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 6.272e-38 Identity = 68/162 (41.98%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ ++DN V+QVK + +G+ ++QV G KK + KPE GHF GV R LREF ++E +G S+ V F + VD+ RW F+ ASHG SLSHR GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEIEDNRVTQVKELDNDGYRAIQVTTGSKKASRVNKPEAGHFAKAGVEAGRILREFRLSEGEEYAVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164 HSP 2 Score: 48.521 bits (114), Expect = 6.272e-38 Identity = 21/50 (42.00%), Postives = 37/50 (74.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ V ++D RNL+ V+G VPG++G + +K AV Sbjct: 158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGSTGGNLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ERWCT (50S ribosomal protein L3 OS=Erwinia carotovora subsp. atroseptica GN=rplC PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 8.170e-38 Identity = 67/162 (41.36%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ ++ N V+QVK +G+ ++QV G KK +TKPE GHF GV R LREF ++E +G S+ V F + VD+ RW F+ A+HG SLSHR+ GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLANDGYRAVQVTAGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADIKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRAPGSIGQNQTPGKVFKGKKMAGQ 164 HSP 2 Score: 50.0618 bits (118), Expect = 8.170e-38 Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METSB (50S ribosomal protein L3 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplC PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.802e-37 Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T ++ G +PV+VL +D V +T E+ G+ +LQ+G G+ K K+++K E G F V K KL EF V E LLP+G + HF+ GQ+VD+ RW F G+ A+HG SLSHRS GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKLGMTRVFNDGGEHVPVTVLKLDGCQVVAHRTKERNGYTALQLGIGRAKVKNVSKAERGRFAIAEVEPKLKLAEFRVEESDLLPVGAEITADHFVVGQFVDVTGTSIGKGFAGPMKRWNFGGLRATHGVSLSHRSHGSTGGRQDPGKTFKNKKMAG 164 HSP 2 Score: 43.5134 bits (101), Expect = 1.802e-37 Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KM G MG ++ T N+ V ++D R L+ V G VPG +G ++ ++DA+ Sbjct: 160 KKMAGHMGAERVTTLNLKVVQLDIERGLILVEGAVPGVAGGWIQVRDAI 208
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_PECCP (50S ribosomal protein L3 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplC PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.807e-37 Identity = 67/162 (41.36%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ ++ N V+QVK +G+ ++QV G KK +TKPE GHF GV R LREF ++E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164 HSP 2 Score: 50.0618 bits (118), Expect = 1.807e-37 Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_BEII9 (50S ribosomal protein L3 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplC PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.059e-37 Identity = 70/163 (42.94%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G IPV+VL +D V +T E+ G+ ++Q+G G+ K K+++K E G F V K KL EF V + LLPIG + HF+ GQ+VD+ RW F G+ A+HG S+SHRS GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKLGMTRVFTDAGEHIPVTVLKLDGCQVVGHRTKEQNGYVAVQLGIGRAKVKNVSKAERGRFAVAKVEPKLKLAEFRVDDATLLPIGAEITADHFVVGQFVDVTGTSTGKGFAGAMKRWNFGGLRATHGVSISHRSHGSTGGRQDPGKTFKNKKMAG 164 HSP 2 Score: 46.2098 bits (108), Expect = 3.059e-37 Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYF 884 +KM G +G ++ T N+ V + D R L+ V G VPG +G +++++DAV KK K P P F Sbjct: 160 KKMAGHLGTERVTTLNLRVVQTDVERGLILVEGAVPGTAGGWIYVRDAV-KKHLPKEAPLPGKF 222
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RICPR (50S ribosomal protein L3 OS=Rickettsia prowazekii GN=rplC PE=3 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 6.775e-37 Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT K G+ +L +G +K +TKP F + K KL+EF ++ED + I + L V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLAKHGYNALVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 6.775e-37 Identity = 18/52 (34.62%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G+KM G MG + T++N+ ++ +D R L+ ++G +PG +++ +KDA+ K Sbjct: 159 GKKMAGHMGCNKVTIQNLKIFAVDTNRKLIMIQGSIPGHKNSYLLVKDAIKK 210 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |