FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAAR (50S ribosomal protein L3 OS=Staphylococcus aureus (strain MRSA252) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAAN (50S ribosomal protein L3 OS=Staphylococcus aureus (strain N315) GN=rplC PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAAM (50S ribosomal protein L3 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplC PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAAE (50S ribosomal protein L3 OS=Staphylococcus aureus (strain Newman) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAAB (50S ribosomal protein L3 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAA8 (50S ribosomal protein L3 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAA3 (50S ribosomal protein L3 OS=Staphylococcus aureus (strain USA300) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAA2 (50S ribosomal protein L3 OS=Staphylococcus aureus (strain JH1) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_STAA1 (50S ribosomal protein L3 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.258e-24 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKK--------DKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ +N+V Q KT E +G+ ++QVG KK +K+ KP GH + KR +REF + +G + V F+ G +D+ R G P SHG+ HR+ GS G +VFKG+K G Sbjct: 4 GILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKADAAPKRFIREFRNVDVDAYEVGQEVSVDTFVAGDVIDVTGVSKGKGFQGAIKRHGQSRGPMSHGSHF-HRAPGSVGMASDASRVFKGQKMPG 171 HSP 2 Score: 49.2914 bits (116), Expect = 1.258e-24 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 GQKMPGRMGG TV+N+ V ++D ++ V+G VPG V I+ ++ K Sbjct: 166 GQKMPGRMGGNTVTVQNLEVVQVDTENKVILVKGNVPGPKKGLVEIRTSIKK 217
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_GEOBB (50S ribosomal protein L3 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplC PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.259e-24 Identity = 54/162 (33.33%), Postives = 76/162 (46.91%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GLI K G+T + + G RI V+V+ +V Q K+ K+G+ ++QVG G K +VGH + G + RE + +G + F G VD+ RWGFKG +SHG S HR+ GS G P +VFK KK G+ Sbjct: 4 GLIGKKLGMTQIFAEDGRRIAVTVVEAGPCVVVQKKSVAKDGYSAIQVGFGAKDASRANAAQVGHCKGAGAGVFTHYRELRMDNTDAYKLGDVIEAAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQ 164 HSP 2 Score: 47.3654 bits (111), Expect = 1.259e-24 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG++G ++ TV+ + V ++D A NL+ + G +PG++ V IKD+V K Sbjct: 159 KKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLIKDSVKAK 210 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |