FC872785

Overview
NameFC872785
Unique NameFC872785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10813 contig Ccv1_Contig10813:48..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_RICTY (50S ribosomal protein L3 OS=Rickettsia typhi GN=rplC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.775e-37
Identity = 70/163 (42.94%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            RTG+IA K G+T+ ++  G RI ++++ VD   V   KT  K G+ +L +G   +K   +TKP    F    +  K KL+EF ++ED  + I + L V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVFKGKK  G
Sbjct:    2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDGCQVVGHKTLAKHGYNALVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164          

HSP 2 Score: 50.447 bits (119), Expect = 6.775e-37
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845
            G+KM G MG  Q T++N+ ++ ID  R L+ ++G +PG   +++ +KDA+ K
Sbjct:  159 GKKMAGHMGCNQVTIQNLKIFAIDTNRKLIMIQGSIPGHKNSYLLVKDAIKK 210          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_WIGBR (50S ribosomal protein L3 OS=Wigglesworthia glossinidia brevipalpis GN=rplC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.150e-36
Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GLI  K G+T T++  G+ IPV+V+ + DN + Q+K  EK+G+ S+QV  G KK     K  +GHF+   V L R L EF V +++   +G  L +  FI    V+I              RW F G  ASHG SLSHR+ GS GQ   PGKVFKGKK  G
Sbjct:    3 GLIGRKIGMTRTFNSDGSSIPVTVIKISDNKIVQIKKIEKDGYSSIQVTTGVKKFSRENKSIIGHFKKNKVELGRGLWEFKVDKNSKFYVGQVLSINTFININKVNITGISKGKGFSGTMKRWNFHGQDASHGNSLSHRAPGSIGQNQTPGKVFKGKKMSG 163          

HSP 2 Score: 48.521 bits (114), Expect = 1.150e-36
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G +G  + TVKN++V KID    L+ ++G VPG+ G+ + IK  V
Sbjct:  158 GKKMSGHLGYNKNTVKNLFVVKIDLEHELLLIKGSVPGSKGSDLIIKPVV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ERWT9 (50S ribosomal protein L3 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.150e-36
Identity = 67/162 (41.36%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711
            GL+  K G+T  + + G  IPV+V+ ++ N V+QVK  E +G+ ++QV  G KK   +TKP  GHF   GV   R L EF   E A   +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVFKGKK  G+
Sbjct:    3 GLVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKGLENDGYTAIQVTTGAKKASRVTKPAAGHFAKAGVEAGRGLWEFRTAEGAEFTVGQSINVDIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164          

HSP 2 Score: 50.0618 bits (118), Expect = 1.150e-36
Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G++G ++ TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:  158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBCM (50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.499e-36
Identity = 68/161 (42.24%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GLI  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G+ L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VFKGKK  G
Sbjct:    3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163          

HSP 2 Score: 51.6026 bits (122), Expect = 1.499e-36
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G MG ++ T +N+ + ++D  RNL+ ++G VPGA+G  V +K AV
Sbjct:  158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBCH (50S ribosomal protein L3 OS=Vibrio cholerae GN=rplC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.499e-36
Identity = 68/161 (42.24%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GLI  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G+ L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VFKGKK  G
Sbjct:    3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163          

HSP 2 Score: 51.6026 bits (122), Expect = 1.499e-36
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G MG ++ T +N+ + ++D  RNL+ ++G VPGA+G  V +K AV
Sbjct:  158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBC3 (50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.499e-36
Identity = 68/161 (42.24%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GLI  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF +       +G+ L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VFKGKK  G
Sbjct:    3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163          

HSP 2 Score: 51.6026 bits (122), Expect = 1.499e-36
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G MG ++ T +N+ + ++D  RNL+ ++G VPGA+G  V +K AV
Sbjct:  158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_PASMU (50S ribosomal protein L3 OS=Pasteurella multocida GN=rplC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.952e-36
Identity = 68/161 (42.24%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GL+  K G+T  +++ G  IPV+V+ ++ N V+QVKT E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF  TE     +G  + V  F   + VD+              RW F+   A+HG SLSHR LGS GQ   PG+VFKGKK  G
Sbjct:    3 GLVGRKVGMTRIFNEDGVSIPVTVIEIEANRVTQVKTVETDGYSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFAGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 163          

HSP 2 Score: 46.2098 bits (108), Expect = 1.952e-36
Identity = 21/50 (42.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G +G ++ TV+++ V ++D  R L+ V+G VPGA+   V +K AV
Sbjct:  158 GKKMAGHLGNERVTVQSLEVVRVDAERKLLLVKGAVPGATNGDVIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBFM (50S ribosomal protein L3 OS=Vibrio fischeri (strain MJ11) GN=rplC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.543e-36
Identity = 67/161 (41.61%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GL+  K G+T  + + G  IPV+V+ V+ N VSQVKT E +G+ ++QV CG KK   ++KPE GHF   GV   R L EF +       +G  L V  F   + VD+              RW F+    +HG SLSHR+ GS GQ   PG+VFKGKK  G
Sbjct:    3 GLVGRKVGMTRIFTEEGVSIPVTVVEVEANRVSQVKTVETDGYNAIQVTCGSKKANRVSKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGAELTVEVFNEIKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163          

HSP 2 Score: 50.447 bits (119), Expect = 2.543e-36
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G MG ++ T +N+ + ++D  RNL+ ++G VPG++G  V +K AV
Sbjct:  158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_SODGM (50S ribosomal protein L3 OS=Sodalis glossinidius (strain morsitans) GN=rplC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.315e-36
Identity = 67/162 (41.36%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711
            GLI  K G+T  + + G  IPV+V+ ++ N V+QVK  E +G+ ++QV  G KK   + KPE GHF   GV   R L EF V +   + +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVFKGKK  G+
Sbjct:    3 GLIGRKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLENDGYRAIQVTAGTKKANRVIKPEAGHFAKAGVEAGRGLWEFRVEDGEEVTVGQSITVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164          

HSP 2 Score: 49.2914 bits (116), Expect = 4.315e-36
Identity = 22/50 (44.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G++G ++ TV+++ V ++D  RNL+ V+G VPGA+G  + +K AV
Sbjct:  158 GKKMAGQLGNERVTVQSLDVVRVDVERNLLLVKGAVPGATGGDLIVKPAV 207          
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ENTS8 (50S ribosomal protein L3 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.315e-36
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711
            GL+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + +     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVFKGKK  G+
Sbjct:    3 GLVGKKVGMTRIFTEEGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEYTVGQSISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164          

HSP 2 Score: 50.0618 bits (118), Expect = 4.315e-36
Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+KM G++G ++ TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:  158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RICTY6.775e-3742.9450S ribosomal protein L3 OS=Rickettsia typhi GN=rp... [more]
RL3_WIGBR1.150e-3642.8650S ribosomal protein L3 OS=Wigglesworthia glossin... [more]
RL3_ERWT91.150e-3641.3650S ribosomal protein L3 OS=Erwinia tasmaniensis (... [more]
RL3_VIBCM1.499e-3642.2450S ribosomal protein L3 OS=Vibrio cholerae seroty... [more]
RL3_VIBCH1.499e-3642.2450S ribosomal protein L3 OS=Vibrio cholerae GN=rpl... [more]
RL3_VIBC31.499e-3642.2450S ribosomal protein L3 OS=Vibrio cholerae seroty... [more]
RL3_PASMU1.952e-3642.2450S ribosomal protein L3 OS=Pasteurella multocida ... [more]
RL3_VIBFM2.543e-3641.6150S ribosomal protein L3 OS=Vibrio fischeri (strai... [more]
RL3_SODGM4.315e-3641.3650S ribosomal protein L3 OS=Sodalis glossinidius (... [more]
RL3_ENTS84.315e-3640.7450S ribosomal protein L3 OS=Enterobacter sakazakii... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bp
GCGGGGCCGTTATCACGAGGCCCGCTCATTCAGCGGCTCCACCAACTCCT
ACATTTATCCCCTCTCAAGACCCCATCATATTCACATTCATCCCCTTACA
TCTTCTTCATCAGCAGATTCAGCACAGACTCCGCCTTCGCTGCTGCCTCC
GAGATCGATGAGGAGCACGCCTCCAGAATCATTGAAGCTAAGCCGGGCGT
CATGACTGATGCCTCCAAACGCACCGGGCTTATTGCCGTCAAGTGTGGAA
TAACCGCCACCTGGGATAAATGGGGCGCCAGGATTCCCGTCTCTGTGCTT
TTTGTCGATGATAATATCGTCTCTCAAGTTAAAACCTTTGAGAAAGAAGG
TTTCTTTTCCTTGCAGGTTGGATGCGGGCAGAAGAAGGATAAACATATGA
CAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAGG
AAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCAC
ATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACGG
GTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATTT
AAAGGAATGCCAGCATCTCATGGTGCATCATTATCGCATCGAAGTCTTGG
TTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAAT
GCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGTAT
ACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGCCA
GGTGCTTCAGGAAACTTTGTATTTATAAAGGATGCTGTTTACAAGAAACC
TGATGTTAAACTGCTCCCATTCCCCACATACTTTGCA
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