FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ALISL (50S ribosomal protein L3 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplC PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 4.315e-36 Identity = 67/161 (41.61%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV CG KK ++KPE GHF GV R L EF + +G L V F + VD+ RW F +HG SLSHR+ GS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRIFTEEGVSIPVTVVEVEVNRVSQVKTVETDGYNAIQVTCGSKKANRVSKPEAGHFAKAGVEAGRGLWEFRLENGEEFTVGAELSVEIFNEIKKVDVTGTSKGKGFQGAIKRWNFATQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163 HSP 2 Score: 50.447 bits (119), Expect = 4.315e-36 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ + ++D RNL+ ++G VPG++G V +K AV Sbjct: 158 GKKMAGHMGAERCTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_HAMD5 (50S ribosomal protein L3 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 7.323e-36 Identity = 68/163 (41.72%), Postives = 90/163 (55.21%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + K G IPV+V+ + N V+Q+K + +G+ +LQ+ G KK + KP+ GHF V R L EF V+E DA + +G + V F PG VD+ RW F+ ASHG SLSHR GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKLGMTRIFTKDGISIPVTVIEIKANRVTQIKNLDSDGYLALQITTGTKKASRVNKPKAGHFAKANVEAGRGLWEFRVSEQDATVFLGHTFEVSMFKPGDIVDVTGKSKGKGFSGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMSGQ 165 HSP 2 Score: 46.595 bits (109), Expect = 7.323e-36 Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ T++N+ V ++D R ++ ++G VPGA G V +K AV Sbjct: 159 GKKMSGQLGNERVTIQNLEVVRVDVVREILLIKGGVPGAVGKDVIVKLAV 208
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_KLEP7 (50S ribosomal protein L3 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.323e-36 Identity = 65/162 (40.12%), Postives = 88/162 (54.32%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + + +G ++ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEFTVGQNISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164 HSP 2 Score: 50.0618 bits (118), Expect = 7.323e-36 Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_KLEP3 (50S ribosomal protein L3 OS=Klebsiella pneumoniae (strain 342) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.323e-36 Identity = 65/162 (40.12%), Postives = 88/162 (54.32%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + + +G ++ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEFTVGQNISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164 HSP 2 Score: 50.0618 bits (118), Expect = 7.323e-36 Identity = 22/50 (44.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ V ++D RNL+ V+G VPGA+G+ + +K AV Sbjct: 158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_CITK8 (50S ribosomal protein L3 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 9.539e-36 Identity = 67/162 (41.36%), Postives = 88/162 (54.32%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + G IPV+V+ V+ N V+QVK +G+ ++QV G KK +TKPE GHF GV R L EF + E +G S+ V F + VD+ RW F+ A+HG SLSHR GS GQ PGKVFKGKK G+ Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQ 164 HSP 2 Score: 48.1358 bits (113), Expect = 9.539e-36 Identity = 22/50 (44.00%), Postives = 37/50 (74.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ V ++D RNL+ V+G VPGA+G + +K AV Sbjct: 158 GKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBSL (50S ribosomal protein L3 OS=Vibrio splendidus (strain LGP32) GN=rplC PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 9.539e-36 Identity = 66/161 (40.99%), Postives = 86/161 (53.42%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ V+ N +SQVKT E +G+ ++QV G KK +TKPE GHF GV R L EF + +G L V F + VD+ RW F +HG SLSHR+ GS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRVFTEEGVSIPVTVVEVEANRISQVKTLETDGYAAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFEVGAELNVELFNEIKKVDVTGTSKGKGFQGAIKRWNFSTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163 HSP 2 Score: 50.447 bits (119), Expect = 9.539e-36 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ + ++D RNL+ ++G VPG++G V +K AV Sbjct: 158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_HAEDU (50S ribosomal protein L3 OS=Haemophilus ducreyi GN=rplC PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.619e-35 Identity = 69/161 (42.86%), Postives = 90/161 (55.90%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T +++ G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLIGRKVGMTRVFNEDGVSIPVTVIEIEANRVTQVKTLENDGYSAIQVTTGTKKASRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFAGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.595 bits (109), Expect = 1.619e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSNVIVKPAV 206
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_HAHCH (50S ribosomal protein L3 OS=Hahella chejuensis (strain KCTC 2396) GN=rplC PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 2.108e-35 Identity = 64/164 (39.02%), Postives = 92/164 (56.10%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPV--TEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T ++ GA +PV+V+ V+ N+++QVK+ E +G+ ++QV G K + KP GHF GV R + EF + T+ A +G + V F GQ VD+ RW F A+HG SLSHR+ GS GQ +PG+VFKGKK G+ Sbjct: 4 GLVGRKAGMTRLFEDDGAAVPVTVIQVEKNVIAQVKSLEVDGYRAIQVTSGSVKASRVNKPMAGHFAKAGVEAGRVVCEFTLDATDSAEYKVGDEVSVTIFEAGQKVDVSGRSKGKGFAGVIKRWNFSTQDATHGNSLSHRAPGSIGQNQSPGRVFKGKKMAGQ 167 HSP 2 Score: 48.521 bits (114), Expect = 2.108e-35 Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G+MG K TV+ + V ++D + L+ ++G VPGA+G V IK AV Sbjct: 161 GKKMAGQMGNKNVTVQTLKVVRVDEEKGLLLIKGAVPGATGADVVIKPAV 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METCA (50S ribosomal protein L3 OS=Methylococcus capsulatus GN=rplC PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.108e-35 Identity = 68/162 (41.98%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ KCG+T + GA +PV+V+ V+ N V QVKT E +G+ ++QV G KK +TK + GH+ GV R L EF + + D +GT LGV F GQ+VD R F+ A+HG SLSHR+ GS GQ PG+VFKGK+ G Sbjct: 4 GLVGRKCGMTHIFTDAGAAVPVTVIHVEPNRVVQVKTLESDGYRAIQVTTGSKKRSRLTKADAGHYSKAGVEAGRGLWEFRLEDSDQDYTVGTELGVGVFAEGQFVDARARSIGKGFAGVVKRHNFRTQDATHGNSLSHRAPGSIGQNQTPGRVFKGKRMAG 165 HSP 2 Score: 45.0542 bits (105), Expect = 2.108e-35 Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 845 G++M G MG K TV N+ + ID R+L+ V+G VPG G V ++ A K Sbjct: 160 GKRMAGHMGDKNITVPNLRIVGIDAERSLLLVKGAVPGTKGADVIVRPAAKK 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_HAEPS (50S ribosomal protein L3 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.109e-35 Identity = 68/161 (42.24%), Postives = 90/161 (55.90%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T +++ G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRIFNEDGVSIPVTVIEIEANRVTQVKTLENDGYTAVQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFTDVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.9802 bits (110), Expect = 2.109e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGSVPGATNSDVIVKPAV 206 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |