FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ALCBS (50S ribosomal protein L3 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplC PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.746e-35 Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G+I KCG+T + + G +PV+V+ V N VSQVKT E +G+ ++QV G+++ +TK + GHF GV R + EF E G+S+ V F GQ +D+ RW F A+HG SLSHR+ GS GQ PG+VFKGKK G Sbjct: 4 GVIGRKCGMTRVFTEEGVSVPVTVIEVGPNRVSQVKTEESDGYQAVQVTVGERRASRVTKAQAGHFAKAGVEAGRGVWEFR-AEAGEFEAGSSVTVEGFEAGQMIDVTGTSKGKGFAGGVKRWNFSTQDATHGNSLSHRAPGSIGQNQTPGRVFKGKKMAG 163 HSP 2 Score: 49.6766 bits (117), Expect = 2.746e-35 Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 G+KM G +G ++ TV+N+ V ++D +NL+ V+G VPGA+G V ++ AV K Sbjct: 158 GKKMAGHLGAERVTVQNLEVVRVDADKNLLLVKGAVPGATGGDVIVRLAVKAK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBPA (50S ribosomal protein L3 OS=Vibrio parahaemolyticus GN=rplC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.746e-35 Identity = 66/161 (40.99%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV G KK + K E GHF GV R L EF + +G L V F + VD+ RW F+ +HG SLSHR+ GS GQ PG+VFKGKK G Sbjct: 3 GLIGRKVGMTRVFTEEGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTAGSKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFEVGAELTVELFNETKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163 HSP 2 Score: 51.6026 bits (122), Expect = 2.746e-35 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ + ++D RNL+ ++G VPGA+G V +K AV Sbjct: 158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAV 207
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ACTPJ (50S ribosomal protein L3 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.747e-35 Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDGYSAIQVTTGSKKANRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFTDVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.595 bits (109), Expect = 2.747e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSDVIVKPAV 206
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ACTP7 (50S ribosomal protein L3 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.747e-35 Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDGYSAIQVTTGSKKANRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFTDVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.595 bits (109), Expect = 2.747e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSDVIVKPAV 206
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ACTP2 (50S ribosomal protein L3 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.747e-35 Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDGYSAIQVTTGSKKANRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFTDVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.595 bits (109), Expect = 2.747e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSDVIVKPAV 206
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_MANSM (50S ribosomal protein L3 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.578e-35 Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRIFTEEGVSIPVTVIEIEANRVTQVKTLENDGYSAVQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.595 bits (109), Expect = 3.578e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSDVIVKPAV 206
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ACTSZ (50S ribosomal protein L3 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplC PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.578e-35 Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GL+ K G+T + + G IPV+V+ ++ N V+QVKT E +G+ ++QV G KK +TKPE GHF GV R L EF TE +G + V F + VD+ RW F+ A+HG SLSHR LGS GQ PG+VFKGKK G Sbjct: 3 GLVGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDGYTAVQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAG 162 HSP 2 Score: 46.595 bits (109), Expect = 3.578e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G +G ++ TV+++ V ++D R L+ V+G VPGA+ + V +K AV Sbjct: 157 GKKMAGHLGAERVTVQSLEVVRVDAERKLLLVKGAVPGATNSDVIVKPAV 206
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_THEP3 (50S ribosomal protein L3 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplC PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.660e-35 Identity = 62/159 (38.99%), Postives = 89/159 (55.97%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 696 + G++ K G+T +D+ G IPV+V+ +V Q KT E +G+ ++QVG G K+K +TKP +GHF+ GVP KR LREF + + + +G+ + V F PG VD+ R+G P SHG S HR +GS G PG+ FKGK Sbjct: 2 KKGILGRKHGMTQIFDEKGEVIPVTVIEAGPCVVVQKKTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVDIFKPGDRVDVTGISKGKGFAGVVKRYGANRGPMSHG-SKYHRRVGSMGATTDPGRTFKGK 159 HSP 2 Score: 55.8398 bits (133), Expect = 4.660e-35 Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 G+ MPG MG ++ T++N+ V K+DP NL+ V+G VPG G+ + IKD+V K Sbjct: 158 GKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLLIIKDSVKSK 210
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ARTCA (50S ribosomal protein L3 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplC PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 7.902e-35 Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 1 Query: 202 MTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 MT GL+ K G+T WD+ IPV+V+ D N+++Q++ E +G+ ++Q+G GQ + +TKP GHF GV +R + E + A +G L V F GQ +D+ R GF G+ ASHGA +HR GS G P +VFKG K G Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQADSNVITQLRNAEVDGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAAEYELGQELSVELFAAGQKIDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKGMKMAG 169 HSP 2 Score: 50.8322 bits (120), Expect = 7.902e-35 Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G KM GRMG + T N+ V+ +D ++L+ ++G VPGA G VF++ AV Sbjct: 164 GMKMAGRMGAVRHTTLNLTVHAVDAEKSLLLIKGAVPGARGQVVFVRTAV 213
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_VIBHB (50S ribosomal protein L3 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplC PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.906e-35 Identity = 66/161 (40.99%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V+ N VSQVKT E +G+ ++QV G KK + K E GHF GV R L EF + +G L V F + VD+ RW F+ +HG SLSHR+ GS GQ PG+VFKGKK G Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTAGSKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFAVGAELTVELFNETKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAG 163 HSP 2 Score: 50.447 bits (119), Expect = 7.906e-35 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ + ++D RNL+ ++G VPG++G V +K AV Sbjct: 158 GKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSTGGNVIVKPAV 207 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |