FC872786

Overview
NameFC872786
Unique NameFC872786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_KLUMA (40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   78 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDS+  +  A V+KV+GRTGSRG VTQVRV+FL+D  R I+RNVKGPVREGDI
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_HUMAN (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_BOVIN (40S ribosomal protein S28 OS=Bos taurus GN=RPS28 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_ASHGO (40S ribosomal protein S28 OS=Ashbya gossypii GN=RPS28A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   78 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDS+  +  A V+KV+GRTGSRG VTQVRV+FLDD +R I+RNVKGPVRE DI
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDI 53          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_KLULA (40S ribosomal protein S28 OS=Kluyveromyces lactis GN=RPS28 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.241e-12
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 3
Query:   99 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            A V+KV+GRTGSRG VTQVRV+FL+D  R I+RNVKGPVREGDI
Sbjct:   10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_OSTOS (40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   78 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDI 230
            MD  +K A V K +GRTGS+GQ TQVRV+F+DD  NR I RNVKGPVREGDI
Sbjct:    1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDI 52          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_NEUCR (40S ribosomal protein S28 OS=Neurospora crassa GN=rps-28 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   78 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDS    +K   V +V+GRTGSRG VTQVRV+F+DDQ R I+RNVKGPVRE DI
Sbjct:    1 MDSSKAPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDI 54          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28B_YEAST (40S ribosomal protein S28-B OS=Saccharomyces cerevisiae GN=RPS28B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   78 MDSQ--IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDS+  +  A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DI
Sbjct:    1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28A_YEAST (40S ribosomal protein S28-A OS=Saccharomyces cerevisiae GN=RPS28A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 3
Query:   99 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DI
Sbjct:   10 AKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_CANGA (40S ribosomal protein S28 OS=Candida glabrata GN=RPS28A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 3
Query:   99 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DI
Sbjct:   10 ARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53          
The following BLAST results are available for this feature:
BLAST of FC872786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS28_KLUMA3.073e-1269.8140S ribosomal protein S28 OS=Kluyveromyces marxian... [more]
RS28_HUMAN3.073e-1272.3440S ribosomal protein S28 OS=Homo sapiens GN=RPS28... [more]
RS28_BOVIN3.073e-1272.3440S ribosomal protein S28 OS=Bos taurus GN=RPS28 P... [more]
RS28_ASHGO4.013e-1269.8140S ribosomal protein S28 OS=Ashbya gossypii GN=RP... [more]
RS28_KLULA5.241e-1277.2740S ribosomal protein S28 OS=Kluyveromyces lactis ... [more]
RS28_OSTOS8.940e-1269.2340S ribosomal protein S28 OS=Ostertagia ostertagi ... [more]
RS28_NEUCR1.168e-1166.6740S ribosomal protein S28 OS=Neurospora crassa GN=... [more]
RS28B_YEAST1.168e-1167.9240S ribosomal protein S28-B OS=Saccharomyces cerev... [more]
RS28A_YEAST1.992e-1175.0040S ribosomal protein S28-A OS=Saccharomyces cerev... [more]
RS28_CANGA2.601e-1175.0040S ribosomal protein S28 OS=Candida glabrata GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872786 ID=FC872786; Name=FC872786; organism=Citrus clementina; type=EST; length=516bp
GGGGGTTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTCACCTT
CTCTCTCTTCTCGCCTCTTTGCTCAGAATGGATTCTCAGATTAAGCACGC
TGTGGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGTTACTC
AAGTGAGAGTCAAGTTTTTAGATGATCAGAACCGATTCATCATGAGGAAT
GTGAAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGCTCGAGTCTGA
GAGAGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATACTATC
TCAAACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAGTAGGC
TAGTGATTGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTTTTCAT
ATTAAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTTTAATA
TCGTTCTCATTGAAATGGAGTTAAATTTGCTTTAAAGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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