FC872790

Overview
NameFC872790
Unique NameFC872790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   64 MIVADAYKGLLKIS---GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 528
            + + D Y  L  +    G++T L T   +G  FK    V V    G++YFTD S  Y  R  + I+D  +    GRL+ +DP TKET +L+ +L+   G  +S D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E
Sbjct:  114 LYIVDCYYHLSVVGSEGGHATQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEE 269          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   64 MIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYY-LREYILDIFEGKPN-GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 528
            M + D +  L  +   G     L    +G  FK    V V    G++YFTD S+ +    E + +I       GRL+ +DP TKET +L+ +L+   G  +S D + +V  E    R  K++++G   G  E F+ T+P  P NI+ + +GH+ ++ + E
Sbjct:  120 MYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAE-FLVTIPN-PGNIKRNSDGHFWVSSSEE 277          
The following BLAST results are available for this feature:
BLAST of FC872790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STSY_RAUMA5.585e-1129.81Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STSY_CATRO7.294e-1130.00Strictosidine synthase OS=Catharanthus roseus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872790 ID=FC872790; Name=FC872790; organism=Citrus clementina; type=EST; length=886bp
GGGGGCGGCCGACCACTGGGAATCGCTTTTGCAAACAGCGATCCCGATGC
CGATCGTATCACTATGATCGTTGCGGACGCTTACAAGGGGCTACTGAAAA
TAAGCGGAAATTCAACAGTGTTGCTAACAGATGAGGCCGAGGGTCAAAAA
TTCAAGCTGACGGATGGGGTAGATGTTGCTGATGATGGCATGATTTATTT
TACAGATGCTTCGAATAAATACTACTTAAGGGAATACATCCTTGATATTT
TTGAGGGAAAGCCTAATGGCAGATTACTAAGCTTTGATCCAGTTACCAAG
GAAACCAAAGTTCTCGTTTCTGACCTCTACTTTGCTAACGGAGTTGTGCT
TTCACCAGACCAAACTCATCTCGTTTATTGTGAGACCTCAATGAGAAGGT
GCAGAAAATTTTACATCAAAGGCAAGAACGCTGGACGTGTGGAGAAGTTC
ATTGAGACTTTGCCAGGCTTGCCTGATAACATACGTTATGATGGAGAAGG
CCATTACTTGATTGCATTAGCAACGGAATTTTCGACTTACTGGGATCTAG
CATACAGATATCCCTTTATCCGAAAGGTTTCAGGAATGGTGGTGAGATAC
CTAGGGATGCCACCCATGGGCAAAAGCAGCAGCGGGGTTTTTATCGTTGA
CTTGGATGGAAAACCAATTGCTCACTATTATGATCCTGAAATGTCACTCA
TTTCCAGTGCAATCAAGATTGGAGATCATCTATACTGTGGTTCCGTACAT
CACCGTGGCATTCTTCACCTTGATGTTAATCAACATCCTGCACGGGCCAT
TATATGAGCAACTTAGTCTGCAAATATACATGATCATAAAAGTGCTGGAT
TCTGCTATACAATGATGACAATTTTGACATTAAAGC
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