FC872792

Overview
NameFC872792
Unique NameFC872792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872792 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 201
            MAR KQTARKSTG +APRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of FC872792 vs. ExPASy Swiss-Prot
Match: H3V1_DICDI (Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:   97 TARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 474
            T+   T    PR ++       + PTT     P + R   +    IR+ + S + +I +LP  RLVREI   F   LR    A+LA+Q   EAYL  L ED+ L A HA R TI   D+   +R R
Sbjct:  495 TSASITTPTTPRIRVQRTTTTPTTPTT-----PRKKRRRRLVASVIRRLRNSVDFMIPRLPLSRLVREIMCLFDDGLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSVDMYAWKRAR 615
The following BLAST results are available for this feature:
BLAST of FC872792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETBO5.026e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3V1_DICDI4.704e-1135.71Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872792 ID=FC872792; Name=FC872792; organism=Citrus clementina; type=EST; length=682bp
GGGGGAATTTCTTTACGTTATTGAGGCGTTGCATTCAGATCTGTGCATTT
TGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCG
CGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAG
GCTGCAAGAAAATCTGCTCCAACAACTGGTGGAGTCAAGAAGCCCCATCG
TTACCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATATCAAAAGA
GCACTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCGTGAA
ATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCT
TGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACA
CCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAAGGAT
ATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCC
TTAGGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTTCG
GTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGCATTT
GATATTTGCTAGATAAATGTTTATTGTGGAGCTTATCTTGTTTCACTTTA
CCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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