FC872797

Overview
NameFC872797
Unique NameFC872797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872797_ssr477 microsatellite FC872797_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:80..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETDVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_HUMAN (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 64/138 (46.38%), Postives = 86/138 (62.32%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ V GV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct:   79 AMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_BOVIN (Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.375e-25
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct: 2051 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 2186          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.282e-24
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  239 MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            MLKLG+K + GV+RVTI+++KNILF I+ PDV+K+P+S+TY++FGEAKIED            F+ P+     A                           +DI+LV+TQA  +R+KA+KALK +N DIV+AIMELT
Sbjct:   80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAGA-ADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKALKNNNNDIVNAIMELT 215          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-24
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVM----AKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +    A                           RDI+LVM QA VSR+KAV+AL+ ++ DIV+AIMELT
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPESAPRPRVRLECKEEEEEEEEEVDEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1561          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_CHILA (Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.364e-24
Identity = 62/138 (44.93%), Postives = 86/138 (62.32%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+ VM+QA VSR+KAV+ALK ++ +IV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIEWVMSQANVSRAKAVRALKNNSNNIVNAIMELT 214          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA2_HUMAN (Nascent polypeptide-associated complex subunit alpha-2 OS=Homo sapiens GN=NACA2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 61/138 (44.20%), Postives = 81/138 (58.70%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            AM KLG+  VTGV+RVTI ++KNILF I+K DV+KSP S+ Y++FGEAKI+D            FR+   G  +                            +D+ LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAYIVFGEAKIQDLSQQAQLAAAEKFRV--QGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKDVKLVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
The following BLAST results are available for this feature:
BLAST of FC872797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA_PONAB3.375e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE3.375e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_HUMAN3.375e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_DANRE3.375e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOVIN3.375e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACAM_MOUSE3.375e-2546.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_DROME1.282e-2444.53Nascent polypeptide-associated complex subunit alp... [more]
NACAD_HUMAN1.675e-2445.77NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_CHILA6.364e-2444.93Nascent polypeptide-associated complex subunit alp... [more]
NACA2_HUMAN7.780e-2244.20Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CE06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872797 ID=FC872797; Name=FC872797; organism=Citrus clementina; type=EST; length=801bp
CAATTTTATCAAAATGTCGCCACCAGCTCCCATCGTTGAGACACCAGTCG
AGGAACCTGAAAAAATTAAGCCTCAGGATGAGGATGAGCCTGTAGTTGAA
GATGTTAAGGACGATGAGGAAGAAGATGATGACCACGACAATGACGATGA
TGACGAGGACGACGATGACAACAAAGACGATGGAGCTCAAGGAGGGAGTT
CAAAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGGCAATGCTGAAGTTG
GGCATGAAACCTGTAACAGGAGTTAGCAGGGTAACCATCAAGAGAACCAA
AAATATACTATTTTTCATCTCAAAGCCTGATGTTTTCAAGAGCCCAAATT
CTGAAACGTACGTCATATTTGGGGAAGCCAAAATAGAGGATTTGAGCTCC
CAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCTGACATGGGATC
GGTGATGGCGAAACCAGATGCCTCTTCTGCTGCTGCTGGTGCACAACAAG
ATGAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTGAGCCTCGGGACATT
GATTTGGTCATGACACAGGCCGGTGTCTCAAGAAGCAAGGCTGTCAAAGC
TCTGAAGACACATAATGGAGACATTGTTAGTGCTATCATGGAGCTTACTA
CTTGAGTAGATTTGCTTCCATGCAGTATTTTTCTGTCGATGAATTTAGTT
ATTGTAGTCGGTGAGATGACTGAATTACTACTCTATTTTTGTGCACTTAA
TGCAATTTCTGTTGCAGATACNATTTCTTTTGCAGTGGGGATGAGAATCC
T
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