FC872797

Overview
NameFC872797
Unique NameFC872797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872797_ssr477 microsatellite FC872797_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:80..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_CAEBR (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis briggsae GN=CBG05114 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  245 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            KLG+K VTGVSRV I+++KNILF I+KPDVFKSP S+TY+IFGEAKIED             +M  + ++    +                        +DI+LV++QA  +R+KA++ALK  + DIV+AIM LT
Sbjct:   70 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHA--------QMSAIENMKPTREAPQLKTVEEDDNEDVEEDSTGIEEKDIELVISQANTTRNKAIRALKDADNDIVNAIMSLT 196          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACP1_HUMAN (Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A  KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LV++QA V  +KAV+ALK  N DIV+AIMELT
Sbjct:   78 ARFKLGLQQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYMVFGEAKIEDLSQEAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEGSEDEEVDETGVEIKDIELVLSQANVWGAKAVRALKNSN-DIVNAIMELT 212          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_CAEEL (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis elegans GN=Y65B4BR.5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 2
Query:  245 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            KLG+K VTGVSRV I+++KNILF I+KPDVFKSP S+TY+IFGEAKIED             + P   +   K                          +DI+LV++QA  +R+KA++ALK  + DIV+AIM LT
Sbjct:   68 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHAQMSAIENLK-PTREAPQLK-----TVEEDENEDVEFKEDSTGIEEKDIELVISQANTTRNKAIRALKEADNDIVNAIMSLT 196          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_EMENI (Nascent polypeptide-associated complex subunit alpha OS=Emericella nidulans GN=egd2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.510e-20
Identity = 59/148 (39.86%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD----------XXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED                +     A  D                                 P+DIDLVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQASAAQQLAAAEAAGEHAGHDHDHDKGKGKAPETEAKKEEEEDDGEEVDETGLEPKDIDLVMAQANVSRKKAVKALRENDNDIVNSIMALS 202          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_NEUCR (Nascent polypeptide-associated complex subunit alpha OS=Neurospora crassa GN=egd-2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.164e-19
Identity = 56/142 (39.44%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMP----DMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KL ++ V G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED                    D      + +                        +DI+LVMTQA VSR KA+KALK ++ DIV++IM L+
Sbjct:   58 AIEKLHLQRVPGITRVTLRRPKNILFVINNPEVYKSPNSNTYIVFGEAKIEDLNASAQAAAAQQLASQSAEHDHAGHTHEHEEAGKAKEEEEEDEGEEVDAEGIEDKDIELVMTQANVSRKKAIKALKENDNDIVNSIMALS 199          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_COCIM (Nascent polypeptide-associated complex subunit alpha OS=Coccidioides immitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.164e-19
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGS----------VMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED                +              + K                          +DI+LVM QA VSRSKA+KALK ++ DIV++IM L+
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQASAAQQLSAAEAAGNGEHAGHEHIDLGKGKAPETEKKEEEEEEEGEVDETGLEAKDIELVMAQANVSRSKAIKALKENDNDIVNSIMALS 204          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_MAGGR (Nascent polypeptide-associated complex subunit alpha OS=Magnaporthe grisea GN=EGD2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.051e-18
Identity = 57/144 (39.58%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRM------PDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KL +  V G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED                        G    +                          +DI+LVMTQAGVSR+KA+KALK ++ DIV++IM L+
Sbjct:   57 AIEKLHLIRVDGITRVTLRRPKNILFVINNPEVYKSPNSGTYIVFGEAKIEDLNASAQAAAAQQLASSAGHDHDHAGHSHGEAKASEGDAKKEEEDDDEEVDADGIEDKDIELVMTQAGVSRTKAIKALKENDNDIVNSIMALS 200          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_PHANO (Nascent polypeptide-associated complex subunit alpha OS=Phaeosphaeria nodorum GN=EGD2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.794e-18
Identity = 60/156 (38.46%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGS------------------VMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KLG+K + G++RVT++R KNILF I++PDV+KSP+S T++IFGEAKIED                +  S                  V  K D                        +DI+LVM QA VSR KAVKALK ++ DIV++IM L+
Sbjct:   57 AIAKLGLKHIDGITRVTLRRPKNILFVINQPDVYKSPSSNTWIIFGEAKIEDLNSQAQASAAQQLAQAEAASHDHSGHDHDHDHKGKGKAVEDKKD--DEEDEEEEEEDDEEVDDSGLEAKDIELVMQQASVSRKKAVKALKENDNDIVNSIMALS 210          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_ASPTN (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMG---------SVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KLG+K V G++RVT +R KNILF I++P+V++SP+S T++IFGEAKIED                +            ++ K                          +DI+LVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   55 AIGKLGLKLVPGITRVTFRRPKNILFVINQPEVYRSPSSNTWIIFGEAKIEDLNAQAQASAAQQLAAQEAAQEHAGHEHEDILGKAKEPEAEKKEAEEDDGEEVDESGLEAKDIELVMAQANVSRKKAVKALRENDNDIVNSIMALS 201          
BLAST of FC872797 vs. ExPASy Swiss-Prot
Match: NACA_CHAGB (Nascent polypeptide-associated complex subunit alpha OS=Chaetomium globosum GN=EGD2 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 56/142 (39.44%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  236 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMP----DMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 649
            A+ KL +  V G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED                    D                                 +DI+LVMTQA VSR KA+KALK ++ DIV++IM L+
Sbjct:   58 AIEKLHLTRVPGITRVTLRRPKNILFVINNPEVYKSPNSNTYIVFGEAKIEDLNASAQAAAAQQLANQTAEHDHAGHTHDHKHEAAKEEEEEEDDGEEVDAEGIEDKDIELVMTQANVSRKKAIKALKENDNDIVNSIMALS 199          
The following BLAST results are available for this feature:
BLAST of FC872797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA_CAEBR2.264e-2143.70Nascent polypeptide-associated complex subunit alp... [more]
NACP1_HUMAN2.956e-2144.20Putative nascent polypeptide-associated complex su... [more]
NACA_CAEEL1.123e-2044.44Nascent polypeptide-associated complex subunit alp... [more]
NACA_EMENI9.510e-2039.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEUCR6.164e-1939.44Nascent polypeptide-associated complex subunit alp... [more]
NACA_COCIM6.164e-1938.51Nascent polypeptide-associated complex subunit alp... [more]
NACA_MAGGR1.051e-1839.58Nascent polypeptide-associated complex subunit alp... [more]
NACA_PHANO1.794e-1838.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPTN2.343e-1837.41Nascent polypeptide-associated complex subunit alp... [more]
NACA_CHAGB5.219e-1839.44Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CE06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872797 ID=FC872797; Name=FC872797; organism=Citrus clementina; type=EST; length=801bp
CAATTTTATCAAAATGTCGCCACCAGCTCCCATCGTTGAGACACCAGTCG
AGGAACCTGAAAAAATTAAGCCTCAGGATGAGGATGAGCCTGTAGTTGAA
GATGTTAAGGACGATGAGGAAGAAGATGATGACCACGACAATGACGATGA
TGACGAGGACGACGATGACAACAAAGACGATGGAGCTCAAGGAGGGAGTT
CAAAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGGCAATGCTGAAGTTG
GGCATGAAACCTGTAACAGGAGTTAGCAGGGTAACCATCAAGAGAACCAA
AAATATACTATTTTTCATCTCAAAGCCTGATGTTTTCAAGAGCCCAAATT
CTGAAACGTACGTCATATTTGGGGAAGCCAAAATAGAGGATTTGAGCTCC
CAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCTGACATGGGATC
GGTGATGGCGAAACCAGATGCCTCTTCTGCTGCTGCTGGTGCACAACAAG
ATGAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTGAGCCTCGGGACATT
GATTTGGTCATGACACAGGCCGGTGTCTCAAGAAGCAAGGCTGTCAAAGC
TCTGAAGACACATAATGGAGACATTGTTAGTGCTATCATGGAGCTTACTA
CTTGAGTAGATTTGCTTCCATGCAGTATTTTTCTGTCGATGAATTTAGTT
ATTGTAGTCGGTGAGATGACTGAATTACTACTCTATTTTTGTGCACTTAA
TGCAATTTCTGTTGCAGATACNATTTCTTTTGCAGTGGGGATGAGAATCC
T
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