FC872815

Overview
NameFC872815
Unique NameFC872815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_PIG (60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.037e-31
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKFAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_OPHHA (60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  LKT++++++E  +P RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_HIPCM (60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 66/122 (54.10%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_XENTR (60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.797e-29
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  L+T+++++++  F  RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_ICTPU (60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRAIRR+LTKH+  L T++ ++R   + MRK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKHVDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRAIRRQLTKHEQGLMTKKMQRRSRLYSMRKFAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_PLAFE (60S ribosomal protein L35 OS=Platichthys flesus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.443e-28
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KL+KI VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNEPSQLRVAKVTGGAASKLTKICVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_DANRE (60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRAIRR+LTKH+ +L T++ +++   + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFAVK 122          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_SCHPO (60S ribosomal protein L35 OS=Schizosaccharomyces pombe GN=rpl35 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = 3
Query:   75 IKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            +K  ELR++S+ +               RV K+ GG+ +KLSKIK  R  IA++LTVI++  + A REAYKNKK++PLDLR KKTRAIRR LT ++ S KT ++ K+E YFP+RKYA+K
Sbjct:    3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALK 121          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_YEAST (60S ribosomal protein L35 OS=Saccharomyces cerevisiae GN=RPL35A PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            MA +K +ELR KSK                 +V K++  +   L KIK VR SIA VLTVI+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +AS  TE+++K+++ FP RKYAIK
Sbjct:    1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119          
BLAST of FC872815 vs. ExPASy Swiss-Prot
Match: RL35_CAEEL (60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   66 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 431
            M ++K   LR + K                 RV+KVTGGA +KLSKI+VVR +IA++LTVI+Q QK  LR+ Y + K+ P+DLR KKTRAIRRRLT H+ SL++ +++ +     +RK+A+K
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVK 122          
The following BLAST results are available for this feature:
BLAST of FC872815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_PIG9.037e-3155.7460S ribosomal protein L35 OS=Sus scrofa GN=RPL35 P... [more]
RL35_OPHHA1.180e-3056.5660S ribosomal protein L35 OS=Ophiophagus hannah GN... [more]
RL35_HIPCM7.650e-3054.1060S ribosomal protein L35 OS=Hippocampus comes GN=... [more]
RL35_XENTR3.797e-2954.1060S ribosomal protein L35 OS=Xenopus tropicalis GN... [more]
RL35_ICTPU8.458e-2954.9260S ribosomal protein L35 OS=Ictalurus punctatus G... [more]
RL35_PLAFE1.443e-2852.4660S ribosomal protein L35 OS=Platichthys flesus GN... [more]
RL35_DANRE1.884e-2854.1060S ribosomal protein L35 OS=Danio rerio GN=rpl35 ... [more]
RL35_SCHPO3.008e-2650.4260S ribosomal protein L35 OS=Schizosaccharomyces p... [more]
RL35_YEAST4.495e-2248.3660S ribosomal protein L35 OS=Saccharomyces cerevis... [more]
RL35_CAEEL1.001e-2145.9060S ribosomal protein L35 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CG01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872815 ID=FC872815; Name=FC872815; organism=Citrus clementina; type=EST; length=681bp
GGGCATAACCATACGCATAAGCAGAGGAAGCCGCCGTTGCAGGAGCAGAG
ACACCAAACGTAGCAATGGCTAGGATCAAGGTGCATGAGCTGAGGCAGAA
ATCGAAGGTGGATCTTTTGAACCAGTTGAAGGAACTCAAGGCTGAGCTCG
CCCTCCTTCGCGTTGCTAAGGTCACCGGCGGTGCCCCTAACAAGCTATCC
AAGATCAAGGTGGTGAGGTTATCGATCGCACAAGTGTTGACTGTCATTTC
ACAAAAGCAGAAGGCTGCATTGAGGGAGGCATACAAGAATAAGAAGTTCT
TGCCCCTTGATCTGCGTCCCAAGAAGACCCGGGCTATCAGGAGAAGGCTT
ACCAAGCACCAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAGGGAGAT
GTACTTTCCCATGAGGAAGTACGCCATTAAGGTGTAGGCTAGAATCTTTT
TCTAGGAGTATCTTGGTATCTTGCAGTTACGAACCTATTTTGTTGACAAA
TTTTTACTTTTGTTACCTTTTCAAATATCATTTTTGTTCACTTAAATTTG
CTTTTGTTCAATCTTATGTGTGTAAAACTTGAAGGGTGCATCTCAACCTA
AACAAGATGTGCTAGATTGTGATGGAATAGCAGTCAAGATAGGATTTCTG
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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