FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872832_ssr47 microsatellite FC872832_ssr47:47..62. BLAST: Citrus ESTs to Prunus persica proteins V1
FC872832_ssr64 microsatellite FC872832_ssr64:64..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10075 contig Ccv1_Contig10075:1..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAE 583
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  +  LK +       H+ ++ +  RL S+V +L EKL   E
Sbjct:   77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 177          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAE 583
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  +  LK +       H+ ++ +  RL S+V +L EKL   E
Sbjct:   79 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 179          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 571
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +       H+ +  +K  L +E+  LK KL
Sbjct:   35 GRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKL 571
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +       H+ +  +K  L +E+  LK KL
Sbjct:   35 GRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  176 SQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKL 571
            + + P D  T TG V    E  K     R  N N       +KK++LT+ Q   LE  F  E KL+SDRK KL+ ELGL PRQ+AVWFQNRRAR K K++E+ Y +L+  ++ V  EK  L  EV  L+  L
Sbjct:   42 NSYTPGD--TQTGPVISVPESEKIMNAYRFPNNNNE----MIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALL 167          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVV-------EKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSA 643
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +++++ +       +K  L +E+  LK KL   E      S   E  + + P A
Sbjct:   46 GGGGE---KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAASDGPPA 171          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVV-------EKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSA 643
            G GG    KKR+L+ EQ   LE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  YA L+ +++++ +       +K  L +E+  LK KL   E      S   E  + + P A
Sbjct:   46 GGGGE---KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAASDGPPA 171          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.832e-17
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVE-------KTRLESEVATLKEKL 571
            G GG    KKR+L AEQ   LE  F  ++KL+ +RK ++A +L L PRQVAVWFQNRRAR KTK+IE  +A L++ H+ + +E       K  L +E+A L++++
Sbjct:   57 GGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRV 161          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.832e-17
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVE-------KTRLESEVATLKEKL 571
            G GG    KKR+L AEQ   LE  F  ++KL+ +RK ++A +L L PRQVAVWFQNRRAR KTK+IE  +A L++ H+ + +E       K  L +E+A L++++
Sbjct:   33 GGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRV 137          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.832e-17
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  296 ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLE-------SEVATLKEKLSV------AEKEIKKMSELIEGISLNN-----------PSATIPTDMDTVDSPFTL 688
            A KKR+L  EQ + LE +F  ++KLE +RK KLA ELGL PRQVA+WFQNRRAR KTK++E  Y  LK+  + +   +  L+        ++  LK KL+V       E    K  E  + +  NN           P   IPTD  T +  F +
Sbjct:   70 AEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKGIEENGALKAVEANQSVMANNEVLELSHRSPSPPPHIPTDAPTSELAFEM 224          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX16_ORYSJ5.696e-1951.49Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI5.696e-1951.49Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX20_ORYSJ1.657e-1849.52Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI1.657e-1849.52Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
ATB51_ARATH2.165e-1843.94Putative homeobox-leucine zipper protein ATHB-51 O... [more]
HOX4_ORYSJ1.403e-1743.41Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI1.403e-1743.41Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX8_ORYSJ1.832e-1745.71Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI1.832e-1745.71Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
ATHB5_ARATH1.832e-1738.71Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
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