FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB52_ARATH (Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEI 592
            KK++LT +Q   LE  F    KLE D K +L+ +LGL  RQVAVWFQN+RAR KT+ +E  + TL++ HE  + +K +LE +V  L+++L  A  ++
Sbjct:   11 KKKRLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKRARNQL 107          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFTLD 691
            KKR+L  EQ   LE +F   +KLE +RK +LA  LGL PRQVA+WFQNRRAR KTK++E+ Y  LK   + V  E   L +    L+ ++ VA K  +  SEL   I+LN  +    ++     S   LD
Sbjct:  130 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEI-VALKGREAASEL---INLNKETEASCSNRSENSSEINLD 255          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFTLD 691
            KKR+L  EQ   LE +F   +KLE +RK +LA  LGL PRQVA+WFQNRRAR KTK++E+ Y  LK   + V  E   L +    L+ ++ VA K  +  SEL   I+LN  +    ++     S   LD
Sbjct:  124 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEI-VALKGREAASEL---INLNKETEASCSNRSENSSEINLD 249          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  233 EPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSE 607
            EP    ++ +K N N N       +R+ + EQ + LEM F +E +LE  +K +LA ELGL PRQVA+WFQN+RAR K+K++E  Y  L+  ++N+  +   L+ E   L  +L   ++  +K ++
Sbjct:   15 EPFLTMKKMKKSNHNKNN------QRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQ 133          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.821e-15
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEE-------TYATLKTAHENVVVEKTRLESEVATLKEKLS-VAEKEIKKMSELIEGISLNNPSATIPTDMDT 667
            KKRKLT  Q  LLE  F  E +LE DRK  LA +LGL P QVAVWFQNRRAR KTK++E        +YA LKT  + + V+   L+S+V  L    S   ++ ++   +  + + L      +  +++T
Sbjct:   68 KKRKLTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKVQFLNRLTSHYFQESVQNFDDTFKQVDLLKEKLKMQENLET 197          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATL-------KTAHENVVVEKTRLESEVATLK 562
            G GG    KKR+L+ EQ   LE  F + +KLE +RK +LA  LGL PRQVA+WFQNRRAR KTK++E+ +  L       +  ++ ++   ++L +E+  LK
Sbjct:   96 GGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATL-------KTAHENVVVEKTRLESEVATLK 562
            G GG    KKR+L+ EQ   LE  F + +KLE +RK +LA  LGL PRQVA+WFQNRRAR KTK++E+ +  L       +  ++ ++   ++L +E+  LK
Sbjct:   96 GGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  263 KRNTNGNGGFRAL--KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHE-------NVVVEKTRLESEVATLKEKLSVAEKEIKKMSEL----------IEGISLNNPSATIPTDMDTVDSPF 682
            + N + +G    L  KK++L  EQ + LE  F   +KLE +RK +LA  LG+ PRQ+A+WFQNRRAR KT+++E  Y +LK   E       +++    +L +EV  LK K       +K+ +E              I+L  P  TI T ++T+   F
Sbjct:   72 EENLSDDGAHTMLGEKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKECNEGNIVKREAEASWSNNGSTENSSDINLEMPRETITTHVNTIKDLF 230          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNE--------HKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKL 571
            KK+K+T+EQ + LE  F  E         KL  DRK KL+ ELGL PRQ+AVWFQNR+AR K K++E  Y +L+   + V  EK  L+ E+  LK  +
Sbjct:   71 KKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMI 168          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 1.452e-14
Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYAT-------LKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPS 640
            KK++L  EQ   LE  F   +KLE +RK +LA  LGL PRQ+A+WFQNRRAR KTK++E  Y +       LK+ +++++    +L +E+  LK+       +IK+  E  E    NN S
Sbjct:  115 KKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALKKHDRKESAKIKR--EFAEASWSNNGS 232          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATB52_ARATH1.313e-1544.33Homeobox-leucine zipper protein ATHB-52 OS=Arabido... [more]
HOX21_ORYSJ2.240e-1542.31Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX21_ORYSI2.240e-1542.31Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
ATHB7_ARATH2.925e-1536.80Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
ATB54_ARATH3.821e-1540.00Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
HOX23_ORYSJ4.990e-1543.14Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI4.990e-1543.14Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATB20_ARATH4.990e-1534.59Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]
ATB22_ARATH8.512e-1545.92Homeobox-leucine zipper protein ATHB-22 OS=Arabido... [more]
HAT7_ARATH1.452e-1440.00Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
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