FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 39/101 (38.61%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  305 KRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSE 607
            +++ + EQ + LE+ F +E +LE  +K ++A ELGL PRQVA+WFQN+RAR KTK++E+ Y TL+  + N+  +   ++ E  +L  +L    +E+++  E
Sbjct:   31 QKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKE 131          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.206e-14
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHF-GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAH-------ENVVVEKTRLESEVATLKEKLS 574
            G GG    +KR+ T EQ   LE  F     KLE   K +LA ELGL PRQVA+WFQN+RAR ++K+IE  YA L+  +       E++  EK  L ++V  L+ KL+
Sbjct:   57 GGGGGGGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDELRGKLN 163          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHF-GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAH-------ENVVVEKTRLESEVATLKEKLS 574
            G GG    +KR+ T EQ   LE  F     KLE   K +LA ELGL PRQVA+WFQN+RAR ++K+IE  YA L+  +       E++  EK  L  +V  L+ KL+
Sbjct:   56 GGGGGGGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLN 162          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEH-KLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAH-------ENVVVEKTRLESEVATLKEKLSVAEK 586
            G GG    +KR+ T EQ   LE  F   H KLE   K +LA ELGL PRQVA+WFQN+RAR ++K++E  YA L++ +       E++  EK  L  ++  L+E+L   E+
Sbjct:   66 GRGG-AGERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREE 175          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEH-KLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAH-------ENVVVEKTRLESEVATLKEKLSVAEK 586
            G GG    +KR+ T EQ   LE  F   H KLE   K +LA ELGL PRQVA+WFQN+RAR ++K++E  YA L++ +       E++  EK  L  ++  L+E+L   E+
Sbjct:   66 GRGG-AGERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREE 175          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.576e-13
Identity = 50/127 (39.37%), Postives = 60/127 (47.24%), Query Frame = 2
Query:  224 QQGEPSKPKRRQRKR-----------NTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKL 571
            + G PS P   Q              +   NGG  A KK +L+ EQ+  LE  F     L   +K  LA  L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ EVA L+  L
Sbjct:  116 EAGRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTL 242          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.576e-13
Identity = 50/127 (39.37%), Postives = 60/127 (47.24%), Query Frame = 2
Query:  224 QQGEPSKPKRRQRKR-----------NTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKL 571
            + G PS P   Q              +   NGG  A KK +L+ EQ+  LE  F     L   +K  LA  L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ EVA L+  L
Sbjct:  116 EAGRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGAL 242          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  287 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            G  A KK +LT +Q+ LLE  F +   L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+  LK
Sbjct:  108 GISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELK 199          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  239 SKPKRRQRKRNTNGNG---------GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            S  KR +R+ +T+  G         G  + KK +L+ +Q+ +LE  F +   L   +K  LA +LGL  RQV VWFQNRRAR K K+ E     L+   EN+  E  RL+ EV  L+
Sbjct:   99 STGKRSEREEDTDPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELR 215          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            G GG    KK +L+ EQ+ LLE  F   H L   +K+ LA +L L PRQV VWFQNRRAR K K+ E     LK    ++  E  RL+ EV  L+
Sbjct:   70 GVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR 164          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATB12_ARATH3.234e-1438.61Homeobox-leucine zipper protein ATHB-12 OS=Arabido... [more]
HOX24_ORYSI7.206e-1443.93Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX24_ORYSJ9.411e-1443.93Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX22_ORYSJ2.096e-1342.34Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX22_ORYSI2.096e-1342.34Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX7_ORYSJ3.576e-1339.37Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSI3.576e-1339.37Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HAT9_ARATH1.359e-1245.65Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT4_ARATH1.775e-1238.46Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HOX3_ORYSJ2.318e-1245.26Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
back to top