FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  278 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            G GG    KK +L+ EQ+ LLE  F   H L   +K+ LA +L L PRQV VWFQNRRAR K K+ E     LK    ++  E  RL+ EV  L+
Sbjct:   70 GVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR 164          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  275 NGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            +GNG   + KK +L+ EQA +LE  F     L   +K  LA +L L  RQV VWFQNRRAR K K+ E     LK   EN+  E  RL+ EV+ L+
Sbjct:  153 SGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELR 248          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  254 RQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R   R ++ + G  A KK +L+ EQ+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+A L+
Sbjct:  158 RSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR 260          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  254 RQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R   R ++ + G  A KK +L+ EQ+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+A L+
Sbjct:  158 RSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR 260          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  272 TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVA 580
            + G GG    KK +LT EQ+ LLE  F   + L   +K +LA +L L PRQV VWFQNRRAR K K+ E     LK   E++  E  +L+ E+  L+   S A
Sbjct:  105 SGGGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPA 207          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 2
Query:  263 KRNTNGNGGFR---ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLS 574
            +R+ +G GG     + KK +LT EQA LLE  F   + L    K +LA +LGL  RQV VWFQNRRAR K K+ E     L+   +++  +  RL  ++A L+   S
Sbjct:  101 RRSPSGGGGDEEGASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSS 207          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  272 TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVA 580
            + G GG R  KK +LT EQ+ LLE  F   + L   +K +LA +L L PRQV VWFQNRRAR K K+ E     LK   E++  E  +L+ E+  L+   S A
Sbjct:  107 SGGGGGTR--KKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAA 207          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  287 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            G  A KK +LT +Q+ LLE +F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+  LK
Sbjct:  121 GVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK 212          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  251 RRQRKRNTNGNG--------GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            +R+R+   +G+G        G    KK +L+ +QA +LE  F     L   +K  LA  LGL PRQV VWFQNRRAR K K+ E     LK   E +  E  RLE E+A L+
Sbjct:   90 KRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR 201          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  251 RRQRKRNTNGNG--------GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            +R+R+   +G+G        G    KK +L+ +QA +LE  F     L   +K  LA  LGL PRQV VWFQNRRAR K K+ E     LK   E +  E  RLE E+A L+
Sbjct:   90 KRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR 201          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX3_ORYSI2.318e-1245.26Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HAT3_ARATH3.027e-1244.79Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX27_ORYSJ3.954e-1241.75Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI3.954e-1241.75Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX18_ORYSJ3.954e-1242.72Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX26_ORYSJ5.164e-1240.19Putative homeobox-leucine zipper protein HOX26 OS=... [more]
HOX18_ORYSI5.164e-1243.69Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HAT22_ARATH5.164e-1245.65Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HOX2_ORYSJ6.744e-1241.07Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI6.744e-1241.07Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
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