FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  254 RQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R   R ++ + G  A KK +L+ EQ+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+A L+
Sbjct:  161 RSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR 263          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  254 RQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R   R ++ + G  A KK +L+ EQ+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+A L+
Sbjct:   74 RSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR 176          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  203 TPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKE-KLSVA 580
            T + +  ++G PS         + + + G  + KK +L+ +QA +LE  F   + L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+  L+  KL+ A
Sbjct:  124 TLSSLSGKRGAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATA 250          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  203 TPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKE-KLSVA 580
            T + +  ++G PS         + + + G  + KK +L+ +QA +LE  F   + L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+  L+  KL+ A
Sbjct:  124 TLSSLSGKRGAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATA 250          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  266 RNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R+ + +G  R  KK +LT EQ+ LLE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+  L+
Sbjct:  117 RDDDDDGSTR--KKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR 213          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  266 RNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R+ + +G  R  KK +LT EQ+ LLE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+  L+
Sbjct:  117 RDDDDDGSTR--KKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR 213          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  251 RRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            R   + N + NG  R  KK +L+ +Q+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E++  E  RL+ EV  L+
Sbjct:  175 RASNEDNDDENGSTR--KKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR 276          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  272 TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            ++ +G     KK +LT EQ+ LLE  F   H L   +K+ LA  L L PRQ+ VWFQNRRAR K K+ E     LK    ++  E  RL  EV  L+
Sbjct:  129 SHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELR 225          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  284 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            GG    KK +L+ +Q+ +LE  F   + L   +K  LA +LGL  RQV VWFQNRRAR K K+ E     LK   E +  E  RLE E A L+
Sbjct:  129 GGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR 221          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  284 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            GG  A KK +L+ +QA +LE  F   H L   +K  LA  L L PRQV VWFQNRRAR K K+ E     LK   + +  +  RL  E+A L+
Sbjct:   88 GGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR 180          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX11_ORYSJ6.744e-1241.75Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI6.744e-1241.75Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX1_ORYSJ1.150e-1136.22Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI1.150e-1136.22Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX19_ORYSJ1.962e-1143.43Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI1.962e-1143.43Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT14_ARATH1.962e-1141.35Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
ATB17_ARATH1.962e-1142.27Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
HAT1_ARATH2.563e-1144.09Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HOX28_ORYSJ3.347e-1144.09Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
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