FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  284 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            GG  A KK +L+ +QA +LE  F   H L   +K  LA  L L PRQV VWFQNRRAR K K+ E     LK   + +  +  RL  E+A L+
Sbjct:   88 GGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR 180          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            KK +L+ +Q+ +LE  F     L   +K  LA +LGL PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ EV  L+
Sbjct:   82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR 168          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            KK +L+ +Q+ +LE  F     L   +K  LA +LGL PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ EV  L+
Sbjct:   82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR 168          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 2
Query:  287 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            G  + KK +L+ EQ+ LLE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+  L+
Sbjct:   89 GCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR 180          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 2
Query:  287 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            G  + KK +L+ EQ+ LLE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+  L+
Sbjct:   89 GCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR 180          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 42/96 (43.75%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  275 NGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            + N G R  KK +LT EQ+ LLE  F   H L   +K  LA  L L  RQV VWFQNRRAR K K  E     LK    ++  +  RL+ EV  L+
Sbjct:   60 DSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELR 155          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  275 NGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 562
            +G  G  + KK +L+ +QA +LE  F     L   +K  LA +L L  RQV VWFQNRRAR K K+ E     LK   +N+  E  RL+ EV+ L+
Sbjct:  154 DGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELR 249          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX28_ORYSI3.347e-1144.09Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX17_ORYSJ5.709e-1144.83Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI5.709e-1144.83Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX15_ORYSJ5.709e-1143.48Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI5.709e-1143.48Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
ATHBX_ARATH5.709e-1143.75Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
ATHB4_ARATH7.457e-1141.67Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
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