FC872834

Overview
NameFC872834
Unique NameFC872834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.557e-23
Identity = 61/152 (40.13%), Postives = 84/152 (55.26%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPS-VQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGV 457
            VTS HHAAVNFGQY   GY PN P+ A                           + +LPS +Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++  N D   RNR+GAG+VPY LL+P +   +  K V
Sbjct:  773 VTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCEMGPEEMLAFKAAPEKVW---LDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTV 921          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 60/152 (39.47%), Postives = 78/152 (51.32%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            V S  HAAVNFGQY   GY PNRPT +                       +      L ++     ++++++LSTHS DE YLG+     W  +     AFEKF  K+ E+E  ID RN D  L+NR G   +PY LL P SE GVTG+G+P
Sbjct:  706 VASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEELEKNPDKVFLKTITAQLQTLLG---ISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIP 854          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 59/150 (39.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:   11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            S  HAAVNFGQY YGG   NRPT A                       +       P  +    ++++++LS H+ DE YLG+   P W  D     AF++F  KL  +EG I+ARN+DP LRNR G   +PY LL   SE G+T KG+P
Sbjct:  713 SALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLR---TITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIP 859          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 460
            + S  HAAVNFGQY Y G+ PNRPT +  +                    +H        +Q    +++L+VLS HS DE YLG+   P W  DP     F++F  +L+E+E  +   N DP+L+NRNG    PY LL P +        G+T KG+P
Sbjct:  703 IGSALHAAVNFGQYPYAGFLPNRPTVSRRRMPEPGTEEYAELERDPERAFIH---TITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIP 857          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 59/152 (38.82%), Postives = 77/152 (50.66%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAAVNFGQY Y GY PNRPT +                         F       +Q    ++++++LS H+ DE YLG+   P W +D    AAFE+F  KL ++E  I  RN +  L NR G    PY LL P SE G+TGKG+P
Sbjct:  707 IASALHAAVNFGQYPYAGYLPNRPTVS---RKFMPEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIP 855          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 59/152 (38.82%), Postives = 78/152 (51.32%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAAVNFGQY Y GY PNRPT +                         F       +Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  708 IASALHAAVNFGQYPYAGYLPNRPTVS---RRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 58/153 (37.91%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLR-NRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAAVNFGQY YGG   NRPT +                       +      LP++ +   ++++++LSTH+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN DP L+ NR G   +PY LL P SE G+T +G+P
Sbjct:  685 IASALHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLIS---LSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIP 834          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 57/158 (36.08%), Postives = 78/158 (49.37%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 460
            + S  HAAVNFGQY Y GY PNRPT +  +                    +      L ++     +++++VLS HS DE YLG+   PAW  D     AF +F  +L+E+EG +   N D  L+NRNG    PY LL P +        G+T KG+P
Sbjct:  707 IASALHAAVNFGQYPYAGYLPNRPTVSRRRMPEPGTEAYGELGRDPERAFIRTITSQLQTIIG---ISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIP 861          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 60/153 (39.22%), Postives = 77/153 (50.33%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIE-PAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAAVNFGQY YGGY  NRPT +                       +       P       + I++VLS H+ DE+YLG+ IE   W  D V   AF++F  KL E+E  +  RN D  LRNR G   +PY LL P SE G+T +G+P
Sbjct:  712 IASALHAAVNFGQYPYGGYILNRPTKSRKFMPEKGTPEYDDLAKNYEKAYLR---TITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIP 861          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 57/150 (38.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:   11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            S  HAAVNFGQY YGG   NRPT   +                       +     P  Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN D KLRNR+G   +PY LL P S+ G+T +G+P
Sbjct:  710 SALHAAVNFGQYSYGGLILNRPT---LSRRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIP 856          
The following BLAST results are available for this feature:
BLAST of FC872834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LOX22_HORVU1.557e-2340.13Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_ARATH8.544e-2239.47Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOXX_SOYBN2.486e-2139.33Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_HORVU4.240e-2136.08Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOXA_SOLLC5.538e-2138.82Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU5.538e-2138.82Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX1_SOYBN1.611e-2037.91Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX3_ORYSJ2.104e-2036.08Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX1_LENCU2.104e-2039.22Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX3_PEA3.590e-2038.00Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3CH11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872834 ID=FC872834; Name=FC872834; organism=Citrus clementina; type=EST; length=627bp
GGGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACATTT
ACGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGTATGCAACATCGC
CACTGAAGAAACCATCTGTTGAACAATGGAAATTCTTCCTTGAAAAACCT
GAAAATGCACTTTTGAATACCTTCCCTTCCCAGTGTTCAAGCTACTAAAG
TTATGGCTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTAT
TTAGGAAAAGAAATAGAGCCAGCATGGCGTGAGGACCCGGTTATAAATGC
AGCATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTG
ATGCAAGGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATG
GTGCCATATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAA
AGGAGTTCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATC
GCTCGAATGTTGTGTCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAA
TCAAATAAATTGCAGTTAATGTTGCTGTCGGTGTTATATTATTAACTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top