FC872834

Overview
NameFC872834
Unique NameFC872834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2301..2924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:   11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            S  HAAVNFGQY YGG   NRPT   +                       +     P  Q    ++++++LS H+ DE YLG+   P W  D     AF++F  KL ++E  +  RN D KLRNR G   +PY LL P S+ G+T +G+P
Sbjct:  706 SALHAAVNFGQYPYGGLILNRPT---LSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIP 852          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 57/157 (36.31%), Postives = 78/157 (49.68%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFS-----EPGVTGKGVP 460
            + S  HAAVNFGQY Y G+ PNRPT +                       + F     P +Q    ++I+++LS HS DE YLG+   P W  D     AF++F  +L  +E  I  RN D + +NR G   +PY LL P +     E G+TGKG+P
Sbjct:  728 IASALHAAVNFGQYPYAGFLPNRPTVS---RRFMPEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIP 881          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            S  HAAVNFGQY YGG   NRPT   +                       +     P  Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  +N DP L +R G   +PY LL P S+ G+T +G+P
Sbjct:  713 SALHAAVNFGQYPYGGLILNRPT---LSRRLLPEEGTAEYDEMVKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIP 859          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 56/159 (35.22%), Postives = 79/159 (49.69%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPS-VQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 460
            + S  HAAVNFGQY Y GY PNRPT +                         F I ++ S  Q    ++++++LS HS DE YLG+   P W  DP    AF++F  +L+E+E  +   N DP L+NR G    PY L+ P +        G+T +G+P
Sbjct:  704 IASALHAAVNFGQYPYAGYLPNRPTISRRPMPEPGSKEYTELDENPEK----FFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIP 858          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 54/152 (35.53%), Postives = 75/152 (49.34%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAA++FG Y Y GY PNRPT +                       +   +P L S+     ++I +V S H+ DE YLG+     W +D     AFE+F   L ++E  I   N+    +NR+G   VPY LL P SE G+TGKG+P
Sbjct:  706 IASALHAALHFGLYSYAGYLPNRPTLSCNLMPEPGSVEYEELKTNPDKVFLKTFVPQLQSLLE---ISIFEVSSRHASDEVYLGQRDSIEWTKDKEPLVAFERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEEGLTGKGIP 854          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 55/153 (35.95%), Postives = 76/153 (49.67%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE-PGVTGKGVP 460
            + S  HAAVNFGQY YGG+  NRPT                         +         V+A   ++++++LS H+ DE YLG+   P W  +     AF++F  KL E+E  I  RN D  LRNRNG   +PY +L P  E  G+T +G+P
Sbjct:  708 IASALHAAVNFGQYPYGGFILNRPTITRRLLPEPGTKEYGELTSNYQKAYLR---TITGKVEAIVDLSVIEILSRHASDEVYLGQRDNPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIP 857          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE-------PGVTGKGVP 460
            + S  HAAVNFGQY Y G+ PNRPT +                       + F        Q    ++++++LS HS DE YLG+   P W  D     AF++F  +L+++E  I   N +  L+NRNG   +PY LL P +         G+T  G+P
Sbjct:  714 IASALHAAVNFGQYPYAGFLPNRPTVSRRPMPEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIP 872          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 2
Query:   11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKV-MAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            S  HAAVNFGQY YGG+  NRPT++                       +     ++ S   T V ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  +N D  L NR G   +PY LL P SE G+T +G+P
Sbjct:  715 SALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVKSHQKAYLR----TITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-GLTCRGIP 860          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 55/158 (34.81%), Postives = 75/158 (47.47%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 460
            + S  HAAVNFGQY Y GY PNRP   S+                       F       +QA   +++L++LS HS DE YLG+   P W  D     AF++F  +L E+E  + A N DP  +NR G    PY LL P +        G++ +G+P
Sbjct:  711 IGSALHAAVNFGQYPYAGYLPNRP---SVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPEWTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIP 865          
The following BLAST results are available for this feature:
BLAST of FC872834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LOX3_SOYBN1.364e-1936.67Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX5_ARATH5.183e-1936.31Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX2_PEA5.183e-1936.00Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_ORYSJ2.572e-1835.22Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXB_SOLLC7.485e-1835.53Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOXA_PHAVU7.485e-1835.95Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX4_ORYSJ1.277e-1732.70Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX2_SOYBN1.277e-1737.09Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX2_ORYSJ2.178e-1734.81Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872834 ID=FC872834; Name=FC872834; organism=Citrus clementina; type=EST; length=627bp
GGGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACATTT
ACGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGTATGCAACATCGC
CACTGAAGAAACCATCTGTTGAACAATGGAAATTCTTCCTTGAAAAACCT
GAAAATGCACTTTTGAATACCTTCCCTTCCCAGTGTTCAAGCTACTAAAG
TTATGGCTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTAT
TTAGGAAAAGAAATAGAGCCAGCATGGCGTGAGGACCCGGTTATAAATGC
AGCATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTG
ATGCAAGGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATG
GTGCCATATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAA
AGGAGTTCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATC
GCTCGAATGTTGTGTCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAA
TCAAATAAATTGCAGTTAATGTTGCTGTCGGTGTTATATTATTAACTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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