FC872847

Overview
NameFC872847
Unique NameFC872847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.600e-38
Identity = 90/256 (35.16%), Postives = 141/256 (55.08%), Query Frame = 2
Query:  176 SFSKNNIIGTGRTGATYIAMLPGGCFIMIKRLEDSQHSE----------------KEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWITLLNTNSSLETAVDKSL 895
            S  ++N+IG G +G  Y  +L  G  + +KRL      E                + F +E+ TLG +RH+N+V L   C  +  +LLVY Y+ NG+L D LH ++  ++   W  R +I + +A GL++LHH+  P I+HR+I S  IL+DGD+  +++DFG+A+ ++ +       ++   G  GY+APEY  TL    K D+YSFGVV+LE++T +RP      PE  E  LV+W+        +E  +D  L
Sbjct:  675 SLDEDNVIGAGASGKVYKVVLTNGETVAVKRLWTGSVKETGDCDPEKGYKPGVQDEAFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDLLHSSKGGML--GWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGVAKAVD-LTGKAPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVD----PELGEKDLVKWVCSTLDQKGIEHVIDPKL 923          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.600e-38
Identity = 95/214 (44.39%), Postives = 129/214 (60.28%), Query Frame = 2
Query:  149 LSDLMKATNSFSKNNIIGTGRTGATYIAMLPGGCFIMIKRLED-SQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGER 787
            L  ++ ATN FS  N +G G  G+ Y  +LP G  I +KRL   S   E EF +E+  L  ++HRNLV LLGFC    E +LVY ++ N +L D     E +   + W +R RI  G ARGL +LH +   RIIHR++ +  ILLD +  PK++DFG+ARL N  +T   T  +   G  GY+APEY R    + K DVYSFGV+LLE+I+GE+
Sbjct:  330 LGMILIATNEFSLENKLGQGGFGSVYKGILPSGQEIAVKRLAGGSGQGELEFKNEVLLLTRLQHRNLVKLLGFCNEGNEEILVYEHVPNSSL-DHFIFDEDKRWLLTWDVRYRIIEGVARGLLYLHEDSQLRIIHRDLKASNILLDAEMNPKVADFGMARLFNMDETRGET--SRVVGTYGYMAPEYVRHGQFSAKSDVYSFGVMLLEMISGEK 540          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 2.090e-38
Identity = 98/268 (36.57%), Postives = 152/268 (56.72%), Query Frame = 2
Query:   38 YVKKKEDDPEGNKWAKRIKGTK-GIKVSAFEKSVEKMRL---SDLMKATNSFSKNNIIGTGRTGATYIAMLPGGCFIMIKRLEDSQHSE-KEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEG 826
            ++KK+       K+ KR  G     +++  + +VEK R+    +L KAT++FS++ I+G G  G  Y  ML  G  + +K+ +     + +EF++E+  L  + HR++V LLG C+  +   LVY ++ NG L+  +H  E +     W +RLRIA+  A  L++LH   +  I HR+I S  ILLD  +  K+SDFG +R +    TH +T ++   G +GYV PEY  +   T K DVYSFGVVL+ELITGE+P    +  +   G
Sbjct:  400 FLKKRRMSKRKRKFFKRNGGLLLQQQLNTNKGNVEKTRIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIHE-ESDDYTKTWGMRLRIAVDIAGALSYLHSAASSPIYHRDIKSTNILLDEKYRTKVSDFGTSRSVTIDHTHWTTVIS---GTVGYVDPEYYGSSQYTDKSDVYSFGVVLVELITGEKPVITVSNSQEIRG 663          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.090e-38
Identity = 95/261 (36.40%), Postives = 146/261 (55.94%), Query Frame = 2
Query:  131 SVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAMLPGGCFIMIKRLEDS---QHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWIT-LLNTNSSLETAVDKSLLG 901
            +V    ++DL  AT SFS +N++G G  G  Y A    G  + +K+++ S        +F+  ++ + ++ H N+  L+G+C    + L+VY + +NG+L+D LH +E E   + W  R++IA+G+AR L +LH  C+P I+ +NI S  ILLD +  P LSD GLA  +   +  L+        D GY APE   +   + K D+YSFGVV+LEL+TG +P   T +    E SLV W T  L+   +L   VD +L G
Sbjct:  400 NVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQ------TDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRS--EQSLVRWATPQLHDIDALAKMVDPALKG 652          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.090e-38
Identity = 101/262 (38.55%), Postives = 142/262 (54.20%), Query Frame = 2
Query:  128 KSVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAMLPG-GCFIMIKRLE-DSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWI-TLLNTNSSLETAVDKSLLG 901
            K  +     +L +AT +F  +  +G G  G  +   +      + IK+L+ +     +EF+ E+ TL    H NLV L+GFC    +RLLVY Y+  G+L D LH        +DW  R++IA G+ARGL +LH    P +I+R++    ILL  D++PKLSDFGLA++    D TH+ST V G +   GY AP+Y  T   T K D+YSFGVVLLELITG +   + N     + +LV W   L     +    VD  L G
Sbjct:   86 KKAQTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTY---GYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKA--IDNTKTRKDQNLVGWARPLFKDRRNFPKMVDPLLQG 342          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.090e-38
Identity = 101/250 (40.40%), Postives = 148/250 (59.20%), Query Frame = 2
Query:  131 SVEKMRLSDLMKATNSFSKNNIIGTGRTGATY---------IAMLPG-GCFIMIKRL-EDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPI--DTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEW 841
            +++    ++L  AT +F  ++++G G  G  +          A  PG G  I +K+L +D     +E+L+E+N LG   HR+LV L+G+C+  + RLLVY ++  G+L + L         + W LRL++A+G+A+GLA+L H+   R+I+R+  +  ILLD ++  KLSDFGLA+   PI   +H+ST V    G  GY APEY  T   T K DVYSFGVVLLEL++G R     N P S E +LVEW
Sbjct:   52 NLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFL-HSSETRVIYRDFKTSNILLDSEYNAKLSDFGLAK-DGPIGDKSHVSTRV---MGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVD-KNRP-SGERNLVEW 294          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.730e-38
Identity = 99/261 (37.93%), Postives = 143/261 (54.79%), Query Frame = 2
Query:  131 SVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLH-----PAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHL-STFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWITLLNTNSSLETAVDKSL 895
            +V  + + +L   T++F    +IG G  G  Y  +L  G    IK+L+ S+  ++EFL++++ +  ++  N+V LLG+CV    R+L Y Y  NG+L+D LH             + W  R++IA+G+A+GL +LH    P IIHR+I S  ILL  D   K++DF L+     +   L ST V G F   GY APEY  T   + K DVYSFGVVLLEL+TG +P   T  P   + SLV W T   +   ++  VD  L
Sbjct:   52 AVPSIAVDELKDITDNFGSKALIGEGSYGRVYHGVLKSGRAAAIKKLDSSKQPDREFLAQVSMVSRLKDENVVELLGYCVDGGFRVLAYEYAPNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTF---GYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHT-LPRG-QQSLVTWATPRLSEDKVKQCVDARL 307          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.730e-38
Identity = 92/261 (35.25%), Postives = 145/261 (55.56%), Query Frame = 2
Query:  140 KMRLSDLMKATNSFSKNNIIGTGRTGATYIAMLPGGCF-IMIKRLE-DSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEV-MHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWITLLNTNSSLETAVDKSLLGNGFD 913
            + R  DL KAT  F +N ++GTG  G  Y   +      I +K++  +S    +EF++EI +LG +RH+NLV L G+C  + + LL+Y Y+ NG+L   L+         + W  R +IA G A GL +LH      +IHR++    +L+D D  P+L DFGLARL        +T V    G +GY+APE  R   ++   DV++FGV+LLE+++G +PT      +S    + +W+  L  +  + +A+D   LG+G+D
Sbjct:  350 RFRYRDLYKATEGFKENRVVGTGGFGIVYRGNIRSSSDQIAVKKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDYIPNGSLDSLLYSKPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEQIVIHRDVKPSNVLIDSDMNPRLGDFGLARLYERGSQSCTTVV---VGTIGYMAPELARNGNSSSASDVFAFGVLLLEIVSGRKPT------DSGTFFIADWVMELQASGEILSAIDPR-LGSGYD 600          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.730e-38
Identity = 99/251 (39.44%), Postives = 146/251 (58.17%), Query Frame = 2
Query:  131 SVEKMRLSDLMKATNSFSKNNIIGTGRTGATY---------IAMLPG-GCFIMIKRLE-DSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWIT 847
            +++    ++L  AT +F ++N++G G  G  +          A  PG G  + +K+L+ +     KE+L+E+N LG + H NLV L+G+C   + RLLVY ++  G+L +  H        + W +R+++A+G+A+GL +L H    ++I+R+  +  ILLD DF  KLSDFGLA+     D TH+ST V    G  GY APEY  T   T K DVYSFGVVLLELI+G R   + N+    E SLV+W T
Sbjct:   70 NLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLEN--HLFRRGAQPLTWAIRMKVAVGAAKGLTFL-HEAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKV---IGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRA--MDNSNGGNEYSLVDWAT 312          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.730e-38
Identity = 101/268 (37.69%), Postives = 150/268 (55.97%), Query Frame = 2
Query:  131 SVEKMRLSDLMKATNSFSKNNIIGTGRTGA---------TYIAMLPG-GCFIMIKRL-EDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAPESFEGSLVEWI-TLLNTNSSLETAVDKSL 895
            +++    ++L  AT +F  ++++G G  G+         T  A  PG G  I +K+L +D     +E+L+E+N LG   H NLV L+G+C+  + RLLVY ++  G+L + L         + W LRL++A+G+A+GLA+L HN    +I+R+  +  ILLD ++  KLSDFGLA+     D +H+ST + G +   GY APEY  T   T K DVYS+GVVLLE+++G R       P   E  LVEW   LL     L   +D  L
Sbjct:   53 NLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFL-HNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTY---GYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPG--EQKLVEWARPLLANKRKLFRVIDNRL 314          
The following BLAST results are available for this feature:
BLAST of FC872847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSL1_ARATH1.600e-3835.16Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
CRK36_ARATH1.600e-3844.39Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
WAKLK_ARATH2.090e-3836.57Putative wall-associated receptor kinase-like 11 O... [more]
SRF6_ARATH2.090e-3836.40Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
RLCK7_ARATH2.090e-3838.55Probable serine/threonine-protein kinase RLCKVII O... [more]
APK1A_ARATH2.090e-3840.40Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
PTI1_SOLLC2.730e-3837.93Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
LRKA3_ARATH2.730e-3835.25Lectin-domain containing receptor kinase A4.3 OS=A... [more]
APK2A_ARATH2.730e-3839.44Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
APK1B_ARATH2.730e-3837.69Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872847 ID=FC872847; Name=FC872847; organism=Citrus clementina; type=EST; length=964bp
GGGGGGTATTTTTCTGTTTTGCTTCATGCGTGGTGTGTACGTTAAGAAGA
AGGAAGATGACCCTGAGGGCAACAAATGGGCAAAAAGGATAAAAGGAACA
AAGGGCATCAAGGTTTCAGCATTTGAGAAGTCAGTTGAAAAAATGAGGTT
GAGCGATCTTATGAAAGCGACTAATAGCTTTAGCAAAAACAACATCATTG
GGACAGGAAGAACGGGGGCAACGTACATAGCAATGCTTCCAGGTGGTTGT
TTCATAATGATCAAGAGGTTGGAAGACTCTCAGCATTCGGAGAAAGAATT
TTTGTCTGAAATCAATACTCTAGGGAGCGTTAGACACCGCAACTTGGTTC
CTCTTTTGGGTTTTTGCGTGGCAAAGAAGGAAAGACTTTTGGTGTACAGT
TACCTGGAAAATGGGACACTTTACGATAAACTACATCCAGCAGAACACGA
GGTCATGCACATGGACTGGCCTTTGAGGCTCCGAATTGCAATTGGATCAG
CTAGAGGTCTGGCATGGCTCCATCACAACTGTAACCCTCGGATTATACAT
AGAAACATAAGCTCTAAATGCATTCTGTTGGATGGTGATTTTGAACCGAA
GTTGTCTGATTTTGGCCTTGCAAGGCTTATGAACCCAATTGACACTCATT
TGAGTACTTTTGTCAATGGGGAGTTCGGAGATTTAGGTTATGTTGCTCCT
GAATATCCACGGACGCTGGTAGCCACCCCAAAGGGGGATGTTTATAGCTT
TGGAGTTGTTCTCCTGGAACTGATCACAGGTGAGAGACCAACTCATTTAA
CTAATGCCCCTGAGAGCTTCGAGGGAAGTTTAGTGGAGTGGATCACACTT
CTGAACACTAACTCTTCTCTGGAAACTGCAGTTGATAAGTCCCTGCTTGG
AAATGGTTTTGATGGTGAACTCCACCAATTTCTTAAGGGTTGCTTGTAAC
TGTGTGTTGCCAAC
back to top