FC872847

Overview
NameFC872847
Unique NameFC872847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: VAB1_CAEEL (Ephrin receptor 1 OS=Caenorhabditis elegans GN=vab-1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.843e-13
Identity = 58/211 (27.49%), Postives = 102/211 (48.34%), Query Frame = 2
Query:  188 NNIIGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIH-----RNISSKCILLDGDFEPKLSDFGLARLM----NPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT-GERP 790
            N  +G G  G  Y +       I   +   S  ++ EFL+E   +G   H N++ L+G   + +  ++V  Y+ NG+L   L   +     + W     +  G A G+ +L    +   +H     R+++++ +LLD +   K++DFGL+R +    + ++   +T  NG    + + APE       TP  DV+SFGVV+ E+ + GERP
Sbjct:  725 NTTMGRGGGGGGYESEPYETVAIKTLKSGSSAKAKAEFLTEATIMGQFSHPNVIRLIGVVTSAEPVMIVAEYMANGSLDQFLRNTDQRGEKVHWEKITEMLYGIASGMKYL---TDMGYVHRVSFLRDLAARNVLLDMELRCKIADFGLSRGVRSEGSSVEPEYTT--NGGKIPVRWTAPEAITHRKFTPSSDVWSFGVVIWEVCSFGERP 930          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: RIPK3_RAT (Receptor-interacting serine/threonine-protein kinase 3 OS=Rattus norvegicus GN=Ripk3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.843e-13
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  287 SEKEFLSEINTLGSVRHRNLVPLLGFCVAKK-----ERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPE-YPRTLVATPKGDVYSFGVVLLELITG 781
            + K+   E+  + ++RH N++ LLG     +        LV  ++ENG+L   L P+        WPL  R+      G+ +LH + NP ++HR++    +LLD +   KL+DFGL+       +   +      G L Y+APE       A+   DVYSFGV++  ++ G
Sbjct:   54 NSKKISREVKAMVNLRHENVLLLLGVTENLEWDYVYGPALVTGFMENGSLSGLLQPS----CPRPWPLLCRLLEEVVLGMCYLH-SLNPSLLHRDLKPSNVLLDLELHAKLADFGLSTFQGGSQSGSGSGSRDSGGTLAYLAPELLDNDGKASKASDVYSFGVLVWTVLAG 219          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: EPHA3_CHICK (Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.843e-13
Identity = 64/250 (25.60%), Postives = 118/250 (47.20%), Query Frame = 2
Query:   95 GTKGIKVSAFEKSVEKMRLSDLMKATNSFSK---------NNIIGTGRTGATYIAMLP----GGCFIMIKRLED--SQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTL--YDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT-GERP 790
            G   +K+      V+     D  +A + F+K         + ++G G  G      L         + IK L+   ++   ++FL E + +G   H N++ L G     K  ++V  Y+ENG+L  + + H A+  V+ +   LR     G A G+ +L    +   +HR+++++ IL++ +   K+SDFGL+R++   D   +    G    + + +PE       T   D +S+G+VL E+++ GERP
Sbjct:  584 GNGHLKLPGLRTYVDPHTYEDPNQAVHEFAKELDASNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKAGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR-----GIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED-DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDAWSYGIVLWEVMSYGERP 824          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: BMX_HUMAN (Cytoplasmic tyrosine-protein kinase BMX OS=Homo sapiens GN=BMX PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.843e-13
Identity = 55/204 (26.96%), Postives = 100/204 (49.02%), Query Frame = 2
Query:  197 IGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTL--YDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT-GERPTHL 799
            +G+G+ G   +    G   + +K +++   SE EF  E  T+  + H  LV   G C  +    +V  Y+ NG L  Y + H    E   +     L +      G+A+L  +   + IHR+++++  L+D D   K+SDFG+ R +  +D    + V  +F  + + APE       + K DV++FG+++ E+ + G++P  L
Sbjct:  423 LGSGQFGVVQLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQL-----LEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYV--LDDQYVSSVGTKF-PVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKQPYDL 615          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: ABL2_HUMAN (Tyrosine-protein kinase ABL2 OS=Homo sapiens GN=ABL2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.843e-13
Identity = 57/195 (29.23%), Postives = 94/195 (48.21%), Query Frame = 2
Query:  197 IGTGRTGATYIAMLPG-GCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT 778
            +G G+ G  Y+ +       + +K L++     +EFL E   +  ++H NLV LLG C  +    +V  Y+  G L D L     E +     L +   I SA     + +      IHR+++++  L+  +   K++DFGL+RLM   DT+  T   G    + + APE       + K DV++FGV+L E+ T
Sbjct:  294 LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSA-----MEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTG-DTY--TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIAT 480          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: PRKC_BACSU (Serine/threonine-protein kinase prkC OS=Bacillus subtilis GN=prkC PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 62/204 (30.39%), Postives = 97/204 (47.55%), Query Frame = 2
Query:  194 IIGTGRTGATYIA---MLPGGCFIMIKRLEDSQHSE--KEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERP 790
            +IG G     Y+A   +L     I I R + +  +E  + F  E  +  S+ H N+V +           +V  Y+E  TL  K +   +  +H    L +   I SA  +A  H N   +I+HR+I    IL+D     K++DFG+A  ++       T  N   G + Y++PE  R  +AT K D+Y+ G+VL EL+TG  P
Sbjct:   16 VIGGGGMANVYLAEDIILDREVAIKILRFDYANDNEFIRRFRREAQSASSLDHPNIVSIYDLGEEDDIYYIVMEYVEGMTL--KEYITANGPLHPKEALNIMEQIVSA--IAHAHQN---QIVHRDIKPHNILIDHMGNIKVTDFGIATALSSTTI---THTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGRIP 209          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: PAK2_RABIT (Serine/threonine-protein kinase PAK 2 OS=Oryctolagus cuniculus GN=PAK2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 65/238 (27.31%), Postives = 109/238 (45.80%), Query Frame = 2
Query:   83 KRIKGTKGIKVSAFEKSVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAM-LPGGCFIMIKRLEDSQHSEKEFL-SEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERP 790
            K+ K TK       EK    + + D  K    + K   IG G +G  + A  +  G  + IK++   +  +KE + +EI  +  +++ N+V  L   +   E  +V  YL  G+L D +         MD      +     + L +LH N   ++IHR+I S  +LL  +   KL+DFG    + P  +  ST V   +    ++APE        PK D++S G++ +E++ GE P
Sbjct:  220 KQKKKTKMTDEEIMEKLRTIVSIGDPKKKYTRYEK---IGQGASGTVFTATDVALGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSYLVGDELFVVMEYLAGGSLTDVVTET-----CMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMEGSVKLTDFGFCAQITPEQSKRSTMVGTPY----WMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 442          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: PAK2_HUMAN (Serine/threonine-protein kinase PAK 2 OS=Homo sapiens GN=PAK2 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 65/238 (27.31%), Postives = 109/238 (45.80%), Query Frame = 2
Query:   83 KRIKGTKGIKVSAFEKSVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAM-LPGGCFIMIKRLEDSQHSEKEFL-SEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERP 790
            K+ K TK       EK    + + D  K    + K   IG G +G  + A  +  G  + IK++   +  +KE + +EI  +  +++ N+V  L   +   E  +V  YL  G+L D +         MD      +     + L +LH N   ++IHR+I S  +LL  +   KL+DFG    + P  +  ST V   +    ++APE        PK D++S G++ +E++ GE P
Sbjct:  220 KQKKKTKMTDEEIMEKLRTIVSIGDPKKKYTRYEK---IGQGASGTVFTATDVALGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSYLVGDELFVVMEYLAGGSLTDVVTET-----CMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMEGSVKLTDFGFCAQITPEQSKRSTMVGTPY----WMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 442          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: M3KL4_MOUSE (Mitogen-activated protein kinase kinase kinase OS=Mus musculus GN=Mlk4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 61/220 (27.73%), Postives = 99/220 (45.00%), Query Frame = 2
Query:  194 IIGTGRTGATYIAMLPGGCFIMIKRL-----EDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLY--------DKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEP--------KLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERP 790
            +IG G  G  Y A   G   + +K       +D+  + +    E      +RH N++ L G C+ +    LV  +   G L         D   P       +   + +  A+  ARG+ +LH      I+HR++ S  ILL    E         K++DFGLAR     + H +T ++   G   ++APE  R+ + +   D++S+GV+L EL+TGE P
Sbjct:  115 LIGAGGFGQVYRATWQGQ-EVAVKAARRDPEQDAAAAAESVRREARLFAMLRHPNIIQLRGVCLRQPHLCLVLEFARGGALNRALAAAASDPRAPGPRRARRIPPQVLVNWAVQIARGMLYLHEEAVVPILHRDLKSSNILLLEKIEHDDICNKTLKITDFGLAR-----EWHRTTRMSAA-GTYAWMAPEVIRSSLFSKGSDIWSYGVLLWELLTGEVP 327          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: M3K4_MOUSE (Mitogen-activated protein kinase kinase kinase 4 OS=Mus musculus GN=Map3k4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.155e-12
Identity = 66/235 (28.09%), Postives = 107/235 (45.53%), Query Frame = 2
Query:  128 KSVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAM-LPGGCFIMIK--RLEDSQHSE-KEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLA-RLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKG-------DVYSFGVVLLELITGERPTH 796
            KS + +    L K T  + + N IG G+ G  Y  + +  G  + +K  R + + H   KE   E+     ++H NLV   G  + ++E  +   Y + GTL +       E +   +  ++ +AI        LH +    I+HR+I    I L      KL DFG + +L N   T +   VN   G   Y+APE    ++   KG       D++S G V++E++TG+RP H
Sbjct: 1315 KSYDNVMHVGLRKVTFKWQRGNKIGEGQYGKVYTCISVDTGELMAMKEIRFQPNDHKTIKETADELKIFEGIKHPNLVRYFGVELHREEMYIFMEYCDEGTLEEVSRLGLQEHVIRLYTKQITVAINV------LHEH---GIVHRDIKGANIFLTSSGLIKLGDFGCSVKLKNNAQT-MPGEVNSTLGTAAYMAPE----VITRAKGEGHGRAADIWSLGCVVIEMVTGKRPWH 1535          
The following BLAST results are available for this feature:
BLAST of FC872847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VAB1_CAEEL8.843e-1327.49Ephrin receptor 1 OS=Caenorhabditis elegans GN=vab... [more]
RIPK3_RAT8.843e-1329.82Receptor-interacting serine/threonine-protein kina... [more]
EPHA3_CHICK8.843e-1325.60Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3... [more]
BMX_HUMAN8.843e-1326.96Cytoplasmic tyrosine-protein kinase BMX OS=Homo sa... [more]
ABL2_HUMAN8.843e-1329.23Tyrosine-protein kinase ABL2 OS=Homo sapiens GN=AB... [more]
PRKC_BACSU1.155e-1230.39Serine/threonine-protein kinase prkC OS=Bacillus s... [more]
PAK2_RABIT1.155e-1227.31Serine/threonine-protein kinase PAK 2 OS=Oryctolag... [more]
PAK2_HUMAN1.155e-1227.31Serine/threonine-protein kinase PAK 2 OS=Homo sapi... [more]
M3KL4_MOUSE1.155e-1227.73Mitogen-activated protein kinase kinase kinase OS=... [more]
M3K4_MOUSE1.155e-1228.09Mitogen-activated protein kinase kinase kinase 4 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872847 ID=FC872847; Name=FC872847; organism=Citrus clementina; type=EST; length=964bp
GGGGGGTATTTTTCTGTTTTGCTTCATGCGTGGTGTGTACGTTAAGAAGA
AGGAAGATGACCCTGAGGGCAACAAATGGGCAAAAAGGATAAAAGGAACA
AAGGGCATCAAGGTTTCAGCATTTGAGAAGTCAGTTGAAAAAATGAGGTT
GAGCGATCTTATGAAAGCGACTAATAGCTTTAGCAAAAACAACATCATTG
GGACAGGAAGAACGGGGGCAACGTACATAGCAATGCTTCCAGGTGGTTGT
TTCATAATGATCAAGAGGTTGGAAGACTCTCAGCATTCGGAGAAAGAATT
TTTGTCTGAAATCAATACTCTAGGGAGCGTTAGACACCGCAACTTGGTTC
CTCTTTTGGGTTTTTGCGTGGCAAAGAAGGAAAGACTTTTGGTGTACAGT
TACCTGGAAAATGGGACACTTTACGATAAACTACATCCAGCAGAACACGA
GGTCATGCACATGGACTGGCCTTTGAGGCTCCGAATTGCAATTGGATCAG
CTAGAGGTCTGGCATGGCTCCATCACAACTGTAACCCTCGGATTATACAT
AGAAACATAAGCTCTAAATGCATTCTGTTGGATGGTGATTTTGAACCGAA
GTTGTCTGATTTTGGCCTTGCAAGGCTTATGAACCCAATTGACACTCATT
TGAGTACTTTTGTCAATGGGGAGTTCGGAGATTTAGGTTATGTTGCTCCT
GAATATCCACGGACGCTGGTAGCCACCCCAAAGGGGGATGTTTATAGCTT
TGGAGTTGTTCTCCTGGAACTGATCACAGGTGAGAGACCAACTCATTTAA
CTAATGCCCCTGAGAGCTTCGAGGGAAGTTTAGTGGAGTGGATCACACTT
CTGAACACTAACTCTTCTCTGGAAACTGCAGTTGATAAGTCCCTGCTTGG
AAATGGTTTTGATGGTGAACTCCACCAATTTCTTAAGGGTTGCTTGTAAC
TGTGTGTTGCCAAC
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