FC872847

Overview
NameFC872847
Unique NameFC872847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: LCK_SAISC (Proto-oncogene tyrosine-protein kinase LCK OS=Saimiri sciureus GN=LCK PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.508e-12
Identity = 56/197 (28.43%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  197 IGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGER 787
            +G G+ G  ++        + +K L+    S   FL+E N +  ++H+ LV L    V ++   ++  Y+ENG+L D L       + ++  L +   I    G+A+L        IHR++ +  IL+      K++DFGLARL   I+ +  T   G    + + APE       T K DV+SFG+++ E++T  R
Sbjct:  251 LGAGQFGEVWMGYYNEHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHKRLVRLYAV-VTEEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI--VEGMAFLEER---NYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILMTEIVTHGR 438          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: KRAF1_DROME (Raf homolog serine/threonine-protein kinase phl OS=Drosophila melanogaster GN=phl PE=1 SV=5)

HSP 1 Score: 73.9442 bits (180), Expect = 1.508e-12
Identity = 63/210 (30.00%), Postives = 99/210 (47.14%), Query Frame = 2
Query:  197 IGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKE-FLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGS--ARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATP---KGDVYSFGVVLLELITGERP-THLTN 805
            IG+G  G  Y A   G   +    ++    ++ + F +E+  L   RH N++  +G CV+K    +V  + E  +LY  +H +E +     + L   I IG   A+G+ +LH      IIHR++ S  I L  D   K+ DFGLA              N   G + ++APE  R     P   + DVY+FG+V+ EL+    P  H++N
Sbjct:  478 IGSGSFGTVYRAHWHGPVAVKTLNVKTPSPAQLQAFKNEVAMLKKTRHCNILLFMG-CVSKPSLAIVTQWCEGSSLYKHVHVSETK-----FKLNTLIDIGRQVAQGMDYLHAK---NIIHRDLKSNNIFLHEDLSVKIGDFGLATAKTRWSGEKQ--ANQPTGSILWMAPEVIRMQELNPYSFQSDVYAFGIVMYELLAECLPYGHISN 676          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: EPHA1_HUMAN (Ephrin type-A receptor 1 OS=Homo sapiens GN=EPHA1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.508e-12
Identity = 59/208 (28.37%), Postives = 104/208 (50.00%), Query Frame = 2
Query:  188 NNIIGTGRTGATYIAML---PGGC-FIMIKRLEDSQHSEK--EFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT-GERP 790
            + +IG G  G  Y   L      C  + IK L+D+    +   FL E   +G   H +++ L G    +K  +++  ++ENG L   L   E +++       L+   G A G+ +L    N   +HR+++++ IL++ +   K+SDFGL RL++  D    T   G    + + APE     + T   DV+SFG+V+ E+++ G++P
Sbjct:  627 DTVIGEGEFGEVYRGTLRLPSQDCKTVAIKTLKDTSPGGQWWNFLREATIMGQFSHPHILHLEGVVTKRKPIMIITEFMENGALDAFLREREDQLVPGQLVAMLQ---GIASGMNYLS---NHNYVHRDLAARNILVNQNLCCKVSDFGLTRLLDDFDGTYET--QGGKIPIRWTAPEAIAHRIFTTASDVWSFGIVMWEVLSFGDKP 826          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: YRK_CHICK (Proto-oncogene tyrosine-protein kinase Yrk OS=Gallus gallus GN=YRK PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 57/197 (28.93%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  197 IGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGER 787
            +G G+ G  ++    G   + +K L+    S + FL E   +  +RH  LV L    V+++   +V  ++  G+L D L   +   + +  P  + +A   A G+A++        IHR++ +  IL+  +   K++DFGLARL   I+ +  T   G    + + APE       T K DV+SFG++L EL+T  R
Sbjct:  276 LGNGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLEEAQIMKRLRHDKLVQLYAV-VSEEPIYIVTEFMSQGSLLDFLKDGDGRYLKL--PQLVDMAAQIAAGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALFGKFTIKSDVWSFGILLTELVTKGR 463          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: YES_AVISY (Tyrosine-protein kinase transforming protein Yes (Fragment) OS=Avian sarcoma virus (strain Y73) GN=V-YES PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 66/230 (28.70%), Postives = 108/230 (46.96%), Query Frame = 2
Query:   98 TKGIKVSAFEKSVEKMRLSDLMKATNSFSKNNIIGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGER 787
            T+G+   A+E   E +RL   +            G G  G  ++    G   + IK L+      + FL E   +  +RH  LVPL    V+++   +V  ++  G+L D L   E + + +  P  + +A   A G+A++        IHR++ +  IL+  +   K++DFGLARL   I+ +  T   G    + + APE       T K DV+SFG++L EL+T  R
Sbjct:  252 TQGLAKDAWEIPRESLRLEVKL------------GQGCFGEVWMGTWNGTTKVAIKTLKLGTMMPEAFLQEAQIMKKLRHDKLVPLYAV-VSEEPIYIVTEFMTKGSLLDFLKEGEGKFLKL--PQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 460          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: STE20_USTMA (Serine/threonine-protein kinase SMU1 OS=Ustilago maydis GN=SMU1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 57/200 (28.50%), Postives = 94/200 (47.00%), Query Frame = 2
Query:  197 IGTGRTGATYIAMLPG-GCFIMIKRLEDSQHSEKEFL-SEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERP 790
            IG G +G  + A   G    + IK++   Q  +K+ + +EI  +   RHRN+V  +   + K +  +V  Y+E G+L D        V+  +     +IA  S   L  L H     +IHR+I S  +LL    + KL+DFG    +       +T V   +    ++APE        PK D++S G++ +E++ GE P
Sbjct:  478 IGQGASGGVFTAYQVGTNVSVAIKQMNLEQQPKKDLIINEILVMKESRHRNIVNFIDSFLFKGDLWVVMEYMEGGSLTD--------VVTCNIMTEGQIAAVSREVLEGLRHLHQHGVIHRDIKSDNVLLSLQGDIKLTDFGFCAQIGESQAKRTTMVGTPY----WMAPEVVTRKEYGPKVDIWSLGIMCIEMVEGEPP 665          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: STE20_PENMA (Serine/threonine-protein kinase pakA OS=Penicillium marneffei GN=pakA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 62/216 (28.70%), Postives = 101/216 (46.76%), Query Frame = 2
Query:  170 TNSFSKNNIIGTGRTGATYIAMLPG-GCFIMIKRLE-DSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTHLTNAP 811
            T  +   N IG G +G  + A        + IK++  D Q  +   ++EI  +   +H+N+V  L   +   +  +V  Y+E G+L D        V+  +     +IA      L+ L H  +  +IHR+I S  ILL  D E KL+DFG    +N      +T V   +    ++APE         K D++S G++ +E+I GE P +LT +P
Sbjct:  358 TKKYYNLNKIGQGASGGVFTAYETNTNKCVAIKQMNLDLQPKKDLIINEILVMKDSKHKNIVNFLDSYLHGLDLWVVMEYMEGGSLTD--------VVTFNIMSEGQIAAVCRETLSGLQHLHSKGVIHRDIKSDNILLSMDGEIKLTDFGFCAQINDSQNKRNTMVGTPY----WMAPEVVTRKEYGRKVDIWSLGIMAIEMIEGE-PPYLTESP 560          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: SRK4_SPOLA (Tyrosine-protein kinase isoform SRK4 OS=Spongilla lacustris GN=SRK1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 65/235 (27.66%), Postives = 112/235 (47.66%), Query Frame = 2
Query:  134 VEKMRLSDLMKATNS---FSKNNI-----IGTGRTGATYIAMLPGGCFIMIKRLEDSQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTLYDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELITGERPTH--LTNA 808
            +EK + + L K  N      K  I     +G G+ G  +  +  G   + +K L+    S +EFL E + +  +RH  L+ L   C  ++   +V   +++G+L + L     +   +  P  + +    A G+++L        IHR+++++ IL+      K++DFGLAR+   ID  +     G    + + APE       T K DV+SFG+VL E+IT  R  +  +TNA
Sbjct:  217 MEKPQTAGLSKQANEEWEIEKKQIKLLRGLGAGQFGEVWEGLWNGTTSVAVKTLKPGTMSIEEFLEEASIMKQLRHPKLIQLYAVCTKEEPIYIVTELMKHGSLLEYL---RGDGRSLKLPDLVDMCSQVASGMSYLEQQ---NYIHRDLAARNILVGEHKICKVADFGLARV---IDEEIYEAKLGAKFPIKWTAPEAAMYSRFTIKSDVWSFGIVLYEVITYGRFPYPGMTNA 442          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: EPHA7_RAT (Ephrin type-A receptor 7 OS=Rattus norvegicus GN=Epha7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 60/208 (28.85%), Postives = 107/208 (51.44%), Query Frame = 2
Query:  194 IIGTGRTGATYIAML--PG--GCFIMIKRLED--SQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTL--YDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT-GERP 790
            +IG G  G      L  PG     + IK L+   ++   ++FL E + +G   H N+V L G     K  ++V  ++ENG L  + + H  +  V+ +   LR     G A G+ +L    +   +HR+++++ IL++ +   K+SDFGL+R++      + T   G+   + + APE  +    T   DV+S+G+V+ E+++ GERP
Sbjct:  638 VIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR-----GIAAGMRYL---ADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKI-PVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 836          
BLAST of FC872847 vs. ExPASy Swiss-Prot
Match: EPHA7_MOUSE (Ephrin type-A receptor 7 OS=Mus musculus GN=Epha7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.970e-12
Identity = 60/208 (28.85%), Postives = 107/208 (51.44%), Query Frame = 2
Query:  194 IIGTGRTGATYIAML--PG--GCFIMIKRLED--SQHSEKEFLSEINTLGSVRHRNLVPLLGFCVAKKERLLVYSYLENGTL--YDKLHPAEHEVMHMDWPLRLRIAIGSARGLAWLHHNCNPRIIHRNISSKCILLDGDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDVYSFGVVLLELIT-GERP 790
            +IG G  G      L  PG     + IK L+   ++   ++FL E + +G   H N+V L G     K  ++V  ++ENG L  + + H  +  V+ +   LR     G A G+ +L    +   +HR+++++ IL++ +   K+SDFGL+R++      + T   G+   + + APE  +    T   DV+S+G+V+ E+++ GERP
Sbjct:  638 VIGAGEFGEVCSGRLKLPGQRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR-----GIAAGMRYL---ADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKI-PVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 836          
The following BLAST results are available for this feature:
BLAST of FC872847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LCK_SAISC1.508e-1228.43Proto-oncogene tyrosine-protein kinase LCK OS=Saim... [more]
KRAF1_DROME1.508e-1230.00Raf homolog serine/threonine-protein kinase phl OS... [more]
EPHA1_HUMAN1.508e-1228.37Ephrin type-A receptor 1 OS=Homo sapiens GN=EPHA1 ... [more]
YRK_CHICK1.970e-1228.93Proto-oncogene tyrosine-protein kinase Yrk OS=Gall... [more]
YES_AVISY1.970e-1228.70Tyrosine-protein kinase transforming protein Yes (... [more]
STE20_USTMA1.970e-1228.50Serine/threonine-protein kinase SMU1 OS=Ustilago m... [more]
STE20_PENMA1.970e-1228.70Serine/threonine-protein kinase pakA OS=Penicilliu... [more]
SRK4_SPOLA1.970e-1227.66Tyrosine-protein kinase isoform SRK4 OS=Spongilla ... [more]
EPHA7_RAT1.970e-1228.85Ephrin type-A receptor 7 OS=Rattus norvegicus GN=E... [more]
EPHA7_MOUSE1.970e-1228.85Ephrin type-A receptor 7 OS=Mus musculus GN=Epha7 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872847 ID=FC872847; Name=FC872847; organism=Citrus clementina; type=EST; length=964bp
GGGGGGTATTTTTCTGTTTTGCTTCATGCGTGGTGTGTACGTTAAGAAGA
AGGAAGATGACCCTGAGGGCAACAAATGGGCAAAAAGGATAAAAGGAACA
AAGGGCATCAAGGTTTCAGCATTTGAGAAGTCAGTTGAAAAAATGAGGTT
GAGCGATCTTATGAAAGCGACTAATAGCTTTAGCAAAAACAACATCATTG
GGACAGGAAGAACGGGGGCAACGTACATAGCAATGCTTCCAGGTGGTTGT
TTCATAATGATCAAGAGGTTGGAAGACTCTCAGCATTCGGAGAAAGAATT
TTTGTCTGAAATCAATACTCTAGGGAGCGTTAGACACCGCAACTTGGTTC
CTCTTTTGGGTTTTTGCGTGGCAAAGAAGGAAAGACTTTTGGTGTACAGT
TACCTGGAAAATGGGACACTTTACGATAAACTACATCCAGCAGAACACGA
GGTCATGCACATGGACTGGCCTTTGAGGCTCCGAATTGCAATTGGATCAG
CTAGAGGTCTGGCATGGCTCCATCACAACTGTAACCCTCGGATTATACAT
AGAAACATAAGCTCTAAATGCATTCTGTTGGATGGTGATTTTGAACCGAA
GTTGTCTGATTTTGGCCTTGCAAGGCTTATGAACCCAATTGACACTCATT
TGAGTACTTTTGTCAATGGGGAGTTCGGAGATTTAGGTTATGTTGCTCCT
GAATATCCACGGACGCTGGTAGCCACCCCAAAGGGGGATGTTTATAGCTT
TGGAGTTGTTCTCCTGGAACTGATCACAGGTGAGAGACCAACTCATTTAA
CTAATGCCCCTGAGAGCTTCGAGGGAAGTTTAGTGGAGTGGATCACACTT
CTGAACACTAACTCTTCTCTGGAAACTGCAGTTGATAAGTCCCTGCTTGG
AAATGGTTTTGATGGTGAACTCCACCAATTTCTTAAGGGTTGCTTGTAAC
TGTGTGTTGCCAAC
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