FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.436e-50
Identity = 102/210 (48.57%), Postives = 143/210 (68.10%), Query Frame = 1
Query:    4 QPEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 618
            Q +   YD+EDKIN AVFP LQGGPHNH +  LAVALKQA+TP ++AY +QV +N+      L  KGY LV+GGT+NHLVL +++  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F   AV + ++++ E  G  LKDF   L ++     +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  309 QGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.875e-50
Identity = 104/209 (49.76%), Postives = 140/209 (66.99%), Query Frame = 1
Query:    4 QPEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 618
            Q +   YD+EDKIN AVFP LQGGPHNH +  LAVALKQA+T  +KAY +QV +N+      L   GY LV+GGTENHLVL +L+  G+ G+KVEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++  F   AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  309 QGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.875e-50
Identity = 100/195 (51.28%), Postives = 132/195 (67.69%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 588
            Y+ E  IN AVFP LQGGPHNH +  +AVALKQA T  FK Y  QV AN  AL + LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ        LK+F + L  ++ I++    L+ +VE FAS+F +PG
Sbjct:  280 YELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.449e-50
Identity = 101/194 (52.06%), Postives = 136/194 (70.10%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 591
            Y FED+INFAVFPSLQGGPHNH + A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++ +  K L+DF   L+ + +    +  L+  VE+FA +F MPGF
Sbjct:  309 YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.199e-50
Identity = 101/194 (52.06%), Postives = 136/194 (70.10%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 591
            Y FED+INFAVFPSLQGGPHNH + A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++++  K L+DF   L+ + +     AD    V++FA +F MPGF
Sbjct:  309 YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.216e-49
Identity = 102/209 (48.80%), Postives = 139/209 (66.51%), Query Frame = 1
Query:    4 QPEGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 618
            Q +  +YD+EDKIN AVFP LQGGPHNH +  LAVALKQA+T  +KAY +QV +N       L   GY LV+GGTENHLVL +L+  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++      AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  309 QGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 96/194 (49.48%), Postives = 127/194 (65.46%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 588
            +YD E+KIN AVFP LQGGPHNH +  +AVALKQ  +  F  Y +Q+  NA  L   L   GYSL TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  314 LYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 96/194 (49.48%), Postives = 128/194 (65.98%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 588
            +YD E+KIN AVFP LQGGPHNH +  +AVAL+Q  +  F  Y +QV  NA  L   +   GY+L TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  310 LYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.138e-47
Identity = 105/195 (53.85%), Postives = 133/195 (68.21%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN--KDIEALKADVEKFASSFDMP 585
            +YD EDKINF+VFP  QGGPHNH + ALAVALKQA++P FK Y ++V ANA AL   L   GY LV+ GT++H+VL DLRP+G+ G +VE L +  NIT NKNAV GD SAL PGG+RIGTPAMTSRG  E DFE++  F+  AV L  EIQ    KE  K  KDF   +  +    I  LK ++  ++++F +P
Sbjct:  277 LYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANK-QKDFKAKIATSDIPRINELKQEIAAWSNTFPLP 470          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 97/213 (45.54%), Postives = 133/213 (62.44%), Query Frame = 1
Query:   10 EGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK------------EYGKLLKDFNKGLVNNK---DIEALKADVEKFASSFDMP 585
            E  +Y+ E  IN +VFP  QGGPHNH + ALAVALKQA TP F+AY  QV ANA AL   L       G GY++V+GGT+NHLVL DL+P G+ G++VE++ +L  +  NKN V GD SAL PGG+RIGTPAMT+RG  E+DF ++ + + RAVT+ + I K            +    +K F   L N +   +I  L+++VE +  ++  P
Sbjct:  310 EEELYNLETPINASVFPGHQGGPHNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYPCP 522          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU1.436e-5048.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.875e-5049.76Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_MOUSE1.875e-5051.28Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYM_HUMAN2.449e-5052.06Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.199e-5052.06Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR1.216e-4948.80Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_CAEBR1.588e-4949.48Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL2.074e-4949.48Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_NEUCR1.138e-4753.85Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_NEUCR1.538e-4445.54Putative serine hydroxymethyltransferase, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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